Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_C21
(952 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 118 6e-27
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 118 6e-27
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 118 6e-27
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 118 6e-27
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 66 5e-11
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 66 5e-11
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 66 5e-11
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 65 8e-11
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 40 0.003
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 40 0.003
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 39 0.006
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 33 0.40
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 32 0.69
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 31 0.92
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 30 2.8
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 30 2.8
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 30 2.8
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 30 2.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.7
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 3.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.7
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 118 bits (284), Expect = 6e-27
Identities = 54/67 (80%), Positives = 56/67 (83%)
Frame = +1
Query: 196 IYKCGGIDXRTXEKFEKXAXXMGXGSFKYAWVLXXLKAXRERGIXIDIALWKFETSXYYV 375
IYKCGGID RT EKFEK A MG GSFKYAWVL LKA RERGI IDIALWKFET+ YY+
Sbjct: 28 IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYI 87
Query: 376 TIIDAPG 396
TIIDAPG
Sbjct: 88 TIIDAPG 94
Score = 80.2 bits (189), Expect = 2e-15
Identities = 40/53 (75%), Positives = 41/53 (77%)
Frame = +3
Query: 399 RXFXKNMXXGTSQADCAVLIVAAGTGEFEAGXSKNGXTREXALLAFXLGVXXL 557
R F KNM GTSQADCAVL+VA GTGEFEAG SKNG TRE ALLA LGV L
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL 148
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/27 (74%), Positives = 20/27 (74%)
Frame = +3
Query: 114 MGXXXTXINIVVIGXVDSGKSTTTGSL 194
MG INIVVIG VDSGKSTTTG L
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHL 27
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 118 bits (284), Expect = 6e-27
Identities = 54/67 (80%), Positives = 56/67 (83%)
Frame = +1
Query: 196 IYKCGGIDXRTXEKFEKXAXXMGXGSFKYAWVLXXLKAXRERGIXIDIALWKFETSXYYV 375
IYKCGGID RT EKFEK A MG GSFKYAWVL LKA RERGI IDIALWKFET+ YY+
Sbjct: 28 IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYI 87
Query: 376 TIIDAPG 396
TIIDAPG
Sbjct: 88 TIIDAPG 94
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/27 (74%), Positives = 20/27 (74%)
Frame = +3
Query: 114 MGXXXTXINIVVIGXVDSGKSTTTGSL 194
MG INIVVIG VDSGKSTTTG L
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHL 27
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +3
Query: 399 RXFXKNMXXGTSQADCAVLIVA 464
R F KNM GTSQADCAVL+VA
Sbjct: 96 RDFIKNMITGTSQADCAVLVVA 117
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 118 bits (284), Expect = 6e-27
Identities = 54/67 (80%), Positives = 56/67 (83%)
Frame = +1
Query: 196 IYKCGGIDXRTXEKFEKXAXXMGXGSFKYAWVLXXLKAXRERGIXIDIALWKFETSXYYV 375
IYKCGGID RT EKFEK A MG GSFKYAWVL LKA RERGI IDIALWKFET+ YY+
Sbjct: 28 IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYI 87
Query: 376 TIIDAPG 396
TIIDAPG
Sbjct: 88 TIIDAPG 94
Score = 96.7 bits (230), Expect = 2e-20
Identities = 51/93 (54%), Positives = 56/93 (60%)
Frame = +3
Query: 399 RXFXKNMXXGTSQADCAVLIVAAGTGEFEAGXSKNGXTREXALLAFXLGVXXLXVGVHXM 578
R F KNM GTSQADCAVL+VA GTGEFEAG SKNG TRE ALLA LGV L V + M
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKM 155
Query: 579 DXXXXXYREPRFEXXXXXVSSYXTXXGXHPAXV 677
D + E RF VS + G +P V
Sbjct: 156 DSTEPPFSEARFTEITNEVSGFIKKIGYNPKAV 188
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/27 (74%), Positives = 20/27 (74%)
Frame = +3
Query: 114 MGXXXTXINIVVIGXVDSGKSTTTGSL 194
MG INIVVIG VDSGKSTTTG L
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHL 27
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 118 bits (284), Expect = 6e-27
Identities = 54/67 (80%), Positives = 56/67 (83%)
Frame = +1
Query: 196 IYKCGGIDXRTXEKFEKXAXXMGXGSFKYAWVLXXLKAXRERGIXIDIALWKFETSXYYV 375
IYKCGGID RT EKFEK A MG GSFKYAWVL LKA RERGI IDIALWKFET+ YY+
Sbjct: 28 IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYI 87
Query: 376 TIIDAPG 396
TIIDAPG
Sbjct: 88 TIIDAPG 94
Score = 96.7 bits (230), Expect = 2e-20
Identities = 51/93 (54%), Positives = 56/93 (60%)
Frame = +3
Query: 399 RXFXKNMXXGTSQADCAVLIVAAGTGEFEAGXSKNGXTREXALLAFXLGVXXLXVGVHXM 578
R F KNM GTSQADCAVL+VA GTGEFEAG SKNG TRE ALLA LGV L V + M
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKM 155
Query: 579 DXXXXXYREPRFEXXXXXVSSYXTXXGXHPAXV 677
D + E RF VS + G +P V
Sbjct: 156 DSTEPPFSEARFTEITNEVSGFIKKIGYNPKAV 188
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/27 (74%), Positives = 20/27 (74%)
Frame = +3
Query: 114 MGXXXTXINIVVIGXVDSGKSTTTGSL 194
MG INIVVIG VDSGKSTTTG L
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHL 27
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 65.7 bits (153), Expect = 5e-11
Identities = 57/191 (29%), Positives = 80/191 (41%), Gaps = 7/191 (3%)
Frame = +3
Query: 117 GXXXTXINIVVIGXVDSGKSTTTGSLDLQMWWY*XT----YXREVREXXXXXXXRXLQIC 284
G IN+V +G VD+GKST G L Y RE +E L C
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWY--LSWC 161
Query: 285 LGXGXX---KG*X*AWYXXRYCSLEVRN*XVLCYHH*CSWTRXFXKNMXXGTSQADCAVL 455
+ KG Y E R+ +L + F NM G +QAD AVL
Sbjct: 162 MDTNDEEREKGKT-VEVGRAYFETEKRHFTILD----APGHKSFVPNMIVGANQADLAVL 216
Query: 456 IVAAGTGEFEAGXSKNGXTREXALLAFXLGVXXLXVGVHXMDXXXXXYREPRFEXXXXXV 635
+++A GEFE G + G TRE ++L GV L + V+ MD + E RF+ +
Sbjct: 217 VISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKL 276
Query: 636 SSYXTXXGXHP 668
+ + G +P
Sbjct: 277 TPFLRKLGFNP 287
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = +1
Query: 196 IYKCGGIDXRTXEKFEKXAXXMGXGSFKYAWVLXXLKAXRERGIXIDIALWKFETSXYYV 375
++ G +D RT EK+E+ A G S+ +W + RE+G +++ FET +
Sbjct: 130 MFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMDTNDEEREKGKTVEVGRAYFETEKRHF 189
Query: 376 TIIDAPG 396
TI+DAPG
Sbjct: 190 TILDAPG 196
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 65.7 bits (153), Expect = 5e-11
Identities = 36/84 (42%), Positives = 47/84 (55%)
Frame = +3
Query: 399 RXFXKNMXXGTSQADCAVLIVAAGTGEFEAGXSKNGXTREXALLAFXLGVXXLXVGVHXM 578
+ F NM GTSQAD A+L+V A TGEFE G G T+E ALL LGV L V V+ +
Sbjct: 259 KDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKL 318
Query: 579 DXXXXXYREPRFEXXXXXVSSYXT 650
D + + RF+ +S + T
Sbjct: 319 D--TVDWSQDRFDEIKNNLSVFLT 340
Score = 62.1 bits (144), Expect = 6e-10
Identities = 28/61 (45%), Positives = 37/61 (60%)
Frame = +1
Query: 214 IDXRTXEKFEKXAXXMGXGSFKYAWVLXXLKAXRERGIXIDIALWKFETSXYYVTIIDAP 393
+D RT +KF+ A G SF YAWVL + RERG+ +DI FETS + ++DAP
Sbjct: 197 VDSRTIDKFKHEAARNGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAP 256
Query: 394 G 396
G
Sbjct: 257 G 257
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 135 INIVVIGXVDSGKSTTTGSL 194
IN++V+G VD+GKST G L
Sbjct: 171 INLIVVGHVDAGKSTLMGHL 190
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 65.7 bits (153), Expect = 5e-11
Identities = 36/84 (42%), Positives = 47/84 (55%)
Frame = +3
Query: 399 RXFXKNMXXGTSQADCAVLIVAAGTGEFEAGXSKNGXTREXALLAFXLGVXXLXVGVHXM 578
+ F NM GTSQAD A+L+V A TGEFE G G T+E ALL LGV L V V+ +
Sbjct: 277 KDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKL 336
Query: 579 DXXXXXYREPRFEXXXXXVSSYXT 650
D + + RF+ +S + T
Sbjct: 337 D--TVDWSQDRFDEIKNNLSVFLT 358
Score = 62.1 bits (144), Expect = 6e-10
Identities = 28/61 (45%), Positives = 37/61 (60%)
Frame = +1
Query: 214 IDXRTXEKFEKXAXXMGXGSFKYAWVLXXLKAXRERGIXIDIALWKFETSXYYVTIIDAP 393
+D RT +KF+ A G SF YAWVL + RERG+ +DI FETS + ++DAP
Sbjct: 215 VDSRTIDKFKHEAARNGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAP 274
Query: 394 G 396
G
Sbjct: 275 G 275
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 135 INIVVIGXVDSGKSTTTGSL 194
IN++V+G VD+GKST G L
Sbjct: 189 INLIVVGHVDAGKSTLMGHL 208
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 64.9 bits (151), Expect = 8e-11
Identities = 29/40 (72%), Positives = 30/40 (75%)
Frame = +1
Query: 196 IYKCGGIDXRTXEKFEKXAXXMGXGSFKYAWVLXXLKAXR 315
IYKCGGID RT EKFEK A MG GSFKYAWVL LK +
Sbjct: 28 IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKVTK 67
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/27 (74%), Positives = 20/27 (74%)
Frame = +3
Query: 114 MGXXXTXINIVVIGXVDSGKSTTTGSL 194
MG INIVVIG VDSGKSTTTG L
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHL 27
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 39.9 bits (89), Expect = 0.003
Identities = 25/68 (36%), Positives = 34/68 (50%)
Frame = +3
Query: 378 HH*CSWTRXFXKNMXXGTSQADCAVLIVAAGTGEFEAGXSKNGXTREXALLAFXLGVXXL 557
H C F KNM GTSQ D AVL++AA G E T+E +LA +GV +
Sbjct: 112 HTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNM 164
Query: 558 XVGVHXMD 581
+ ++ D
Sbjct: 165 AIFINKAD 172
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 39.9 bits (89), Expect = 0.003
Identities = 25/68 (36%), Positives = 34/68 (50%)
Frame = +3
Query: 378 HH*CSWTRXFXKNMXXGTSQADCAVLIVAAGTGEFEAGXSKNGXTREXALLAFXLGVXXL 557
H C F KNM GTSQ D AVL++AA G E T+E +LA +GV +
Sbjct: 112 HTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNM 164
Query: 558 XVGVHXMD 581
+ ++ D
Sbjct: 165 AIFINKAD 172
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 38.7 bits (86), Expect = 0.006
Identities = 22/67 (32%), Positives = 26/67 (38%)
Frame = +2
Query: 677 PLSCPXPAGPATXCXXPPPQMPXSKXXPXTLXTAXSDRXAPXHXPXHTXPPXPPXXTRPL 856
P P P+GP + P + P P SD +P P PP PP TR
Sbjct: 200 PSDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPP--TRRP 257
Query: 857 PGXXSPP 877
PG PP
Sbjct: 258 PGPPGPP 264
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 33.5 bits (73), Expect = 0.23
Identities = 22/67 (32%), Positives = 25/67 (37%)
Frame = +2
Query: 683 SCPXPAGPATXCXXPPPQMPXSKXXPXTLXTAXSDRXAPXHXPXHTXPPXPPXXTRPLPG 862
S P P P PPP+ P + P T S + P P P PP T P P
Sbjct: 136 SSPPPPPPPRVPRTPPPRSPPPRRPP---MTPPSPQRRPPRTPPSPEPRNPP-RTPPSPI 191
Query: 863 XXSPPXL 883
PP L
Sbjct: 192 PPPPPRL 198
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 32.7 bits (71), Expect = 0.40
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +2
Query: 689 PXPAGPATXCXXPPPQMPXSKXXPXTLXTAXSDRXAPXHXPXHTXPPXPP 838
P P GPA P P P P D +P P PP PP
Sbjct: 207 PGPDGPAGESTYPEPAAPGPAGPPGPAGPPGPDGASPTAAPGAAGPPGPP 256
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.69
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +2
Query: 689 PXPAGPATXCXXPPPQMPXSKXXPXTLXTAXSDRXAPXHXPXHTXPPXPP 838
P P GPA P P P P D +P P PP PP
Sbjct: 208 PGPDGPAGESTYPEPAGPGPAGPPGPAGPPGPDGASPTAAPGAAGPPGPP 257
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 31.5 bits (68), Expect = 0.92
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 741 PXPSXXRXPSXRPXLTAPPHXTXPXIXPXLXHXPXPAPSPA 863
P P+ + PS + APP P + P P PSPA
Sbjct: 382 PMPAVQQAPSSQQATQAPPKPAPQQAPPVQQNPPKPTPSPA 422
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 677 PLSCPXPAGPATXCXXPPPQMP 742
P CP P P C PPP MP
Sbjct: 68 PPICPPPPPPPMPCPPPPPPMP 89
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = +3
Query: 378 HH*CSWTRXFXKNMXXGTSQADCAVLIVAAGTGEFEAGXSKNGXTREXALLAFXLGV 548
H C + KNM G +Q + A+L+VAA G TRE LLA +GV
Sbjct: 116 HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGV 165
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = +3
Query: 378 HH*CSWTRXFXKNMXXGTSQADCAVLIVAAGTGEFEAGXSKNGXTREXALLAFXLGV 548
H C + KNM G +Q + A+L+VAA G TRE LLA +GV
Sbjct: 117 HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGV 166
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = +3
Query: 378 HH*CSWTRXFXKNMXXGTSQADCAVLIVAAGTGEFEAGXSKNGXTREXALLAFXLGV 548
H C + KNM G +Q + A+L+VAA G TRE LLA +GV
Sbjct: 117 HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGV 166
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/71 (28%), Positives = 21/71 (29%)
Frame = +2
Query: 665 PXXCPLSCPXPAGPATXCXXPPPQMPXSKXXPXTLXTAXSDRXAPXHXPXHTXPPXPPXX 844
P P+ P P P PPP P S P P P PP P
Sbjct: 268 PSVTPMPPPMPPTPGMTPRPPPP--PSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 325
Query: 845 TRPLPGXXSPP 877
P G PP
Sbjct: 326 GPPGMGGMPPP 336
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/63 (28%), Positives = 20/63 (31%)
Frame = +2
Query: 689 PXPAGPATXCXXPPPQMPXSKXXPXTLXTAXSDRXAPXHXPXHTXPPXPPXXTRPLPGXX 868
P P P + PPP P P S P P P PP +PG
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPG----MPGMP 317
Query: 869 SPP 877
PP
Sbjct: 318 PPP 320
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +3
Query: 729 PPKCPXPSXXRXPSXRPXLTAPPHXTXPXIXPXLXHXPXPAPSP 860
P P P R PS P + PP + P P H P P P
Sbjct: 344 PGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPS-GHGMIPPPPP 386
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +3
Query: 729 PPKCPXPSXXRXPSXRPXLTAPPHXTXPXIXPXLXHXPXPAPSPA 863
PP P P+ S +P TAPP P + P PAP PA
Sbjct: 29 PPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAV---PAPAPPPA 70
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/71 (28%), Positives = 21/71 (29%)
Frame = +2
Query: 665 PXXCPLSCPXPAGPATXCXXPPPQMPXSKXXPXTLXTAXSDRXAPXHXPXHTXPPXPPXX 844
P P+ P P P PPP P S P P P PP P
Sbjct: 278 PSVTPMPPPMPPTPGMTPRPPPP--PSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 335
Query: 845 TRPLPGXXSPP 877
P G PP
Sbjct: 336 GPPGMGGMPPP 346
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/63 (28%), Positives = 20/63 (31%)
Frame = +2
Query: 689 PXPAGPATXCXXPPPQMPXSKXXPXTLXTAXSDRXAPXHXPXHTXPPXPPXXTRPLPGXX 868
P P P + PPP P P S P P P PP +PG
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPG----MPGMP 327
Query: 869 SPP 877
PP
Sbjct: 328 PPP 330
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +3
Query: 729 PPKCPXPSXXRXPSXRPXLTAPPHXTXPXIXPXLXHXPXPAPSP 860
P P P R PS P + PP + P P H P P P
Sbjct: 354 PGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPS-GHGMIPPPPP 396
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,826,755
Number of Sequences: 27780
Number of extensions: 146506
Number of successful extensions: 655
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2465154230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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