Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C21
         (952 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   120   3e-29
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   118   6e-29
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   116   4e-28
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   116   4e-28

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  120 bits (288), Expect = 3e-29
 Identities = 56/67 (83%), Positives = 56/67 (83%)
 Frame = +1

Query: 196 IYKCGGIDXRTXEKFEKXAXXMGXGSFKYAWVLXXLKAXRERGIXIDIALWKFETSXYYV 375
           IYKCGGID RT EKFEK A  MG GSFKYAWVL  LKA RERGI IDIALWKFETS YYV
Sbjct: 28  IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYV 87

Query: 376 TIIDAPG 396
           TIIDAPG
Sbjct: 88  TIIDAPG 94



 Score =  116 bits (278), Expect = 4e-28
 Identities = 61/93 (65%), Positives = 63/93 (67%)
 Frame = +3

Query: 399 RXFXKNMXXGTSQADCAVLIVAAGTGEFEAGXSKNGXTREXALLAFXLGVXXLXVGVHXM 578
           R F KNM  GTSQADCAVLIVAAGTGEFEAG SKNG TRE ALLAF LGV  L VGV+ M
Sbjct: 96  RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155

Query: 579 DXXXXXYREPRFEXXXXXVSSYXTXXGXHPAXV 677
           D     Y E RFE     VSSY    G +PA V
Sbjct: 156 DSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAV 188



 Score = 40.3 bits (90), Expect = 3e-05
 Identities = 20/27 (74%), Positives = 20/27 (74%)
 Frame = +3

Query: 114 MGXXXTXINIVVIGXVDSGKSTTTGSL 194
           MG     INIVVIG VDSGKSTTTG L
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHL 27


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  118 bits (285), Expect = 6e-29
 Identities = 55/67 (82%), Positives = 56/67 (83%)
 Frame = +1

Query: 196 IYKCGGIDXRTXEKFEKXAXXMGXGSFKYAWVLXXLKAXRERGIXIDIALWKFETSXYYV 375
           IYKCGGID RT EKFEK A  MG GSFKYAWVL  LKA RERGI IDIALWKFET+ YYV
Sbjct: 28  IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYV 87

Query: 376 TIIDAPG 396
           TIIDAPG
Sbjct: 88  TIIDAPG 94



 Score =  110 bits (264), Expect = 2e-26
 Identities = 59/93 (63%), Positives = 61/93 (65%)
 Frame = +3

Query: 399 RXFXKNMXXGTSQADCAVLIVAAGTGEFEAGXSKNGXTREXALLAFXLGVXXLXVGVHXM 578
           R F KNM  GTSQADCAVLIVAAG GEFEAG SKNG TRE ALLAF LGV  L VGV+ M
Sbjct: 96  RDFIKNMITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155

Query: 579 DXXXXXYREPRFEXXXXXVSSYXTXXGXHPAXV 677
           D     Y E RFE     VSSY    G + A V
Sbjct: 156 DMTDPPYSEARFEEIKKEVSSYIKKIGYNTASV 188



 Score = 40.3 bits (90), Expect = 3e-05
 Identities = 20/27 (74%), Positives = 20/27 (74%)
 Frame = +3

Query: 114 MGXXXTXINIVVIGXVDSGKSTTTGSL 194
           MG     INIVVIG VDSGKSTTTG L
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHL 27


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  116 bits (278), Expect = 4e-28
 Identities = 61/93 (65%), Positives = 63/93 (67%)
 Frame = +3

Query: 399 RXFXKNMXXGTSQADCAVLIVAAGTGEFEAGXSKNGXTREXALLAFXLGVXXLXVGVHXM 578
           R F KNM  GTSQADCAVLIVAAGTGEFEAG SKNG TRE ALLAF LGV  L VGV+ M
Sbjct: 23  RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 82

Query: 579 DXXXXXYREPRFEXXXXXVSSYXTXXGXHPAXV 677
           D     Y E RFE     VSSY    G +PA V
Sbjct: 83  DSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAV 115



 Score = 47.2 bits (107), Expect = 2e-07
 Identities = 20/21 (95%), Positives = 20/21 (95%)
 Frame = +1

Query: 334 DIALWKFETSXYYVTIIDAPG 396
           DIALWKFETS YYVTIIDAPG
Sbjct: 1   DIALWKFETSKYYVTIIDAPG 21


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  116 bits (278), Expect = 4e-28
 Identities = 61/93 (65%), Positives = 63/93 (67%)
 Frame = +3

Query: 399 RXFXKNMXXGTSQADCAVLIVAAGTGEFEAGXSKNGXTREXALLAFXLGVXXLXVGVHXM 578
           R F KNM  GTSQADCAVLIVAAGTGEFEAG SKNG TRE ALLAF LGV  L VGV+ M
Sbjct: 39  RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 98

Query: 579 DXXXXXYREPRFEXXXXXVSSYXTXXGXHPAXV 677
           D     Y E RFE     VSSY    G +PA V
Sbjct: 99  DSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAV 131



 Score = 70.1 bits (164), Expect = 3e-14
 Identities = 32/37 (86%), Positives = 32/37 (86%)
 Frame = +1

Query: 286 WVLXXLKAXRERGIXIDIALWKFETSXYYVTIIDAPG 396
           WVL  LKA RERGI IDIALWKFETS YYVTIIDAPG
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPG 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,114
Number of Sequences: 438
Number of extensions: 2015
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)