Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_C20
(933 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 36 0.008
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 0.044
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 33 0.076
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.13
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.13
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.71
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.6
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 1.6
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 2.2
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 3.5
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 3.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 5.0
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 27 5.0
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 26 6.6
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 8.7
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 35.9 bits (79), Expect = 0.008
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 855 PXXXPGXPPPPPXXXXPXXPPPPP 926
P P PPPPP P PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 35.1 bits (77), Expect = 0.014
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 856 PXXXPXPPPPPXPXXPPXPXPXPPXP 933
P P PPPPP PP P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 841 PXXXPPXXXPXPPPPPXPXXPPXPXPXPP 927
P PP P PPPPP P P P PP
Sbjct: 5 PPGNPP---P-PPPPPGFEPPSQPPPPPP 29
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect(2) = 0.044
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 868 PXPPPPPXPXXPP 906
P PPPPP P PP
Sbjct: 236 PAPPPPPPPTLPP 248
Score = 24.6 bits (51), Expect(2) = 0.59
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +1
Query: 874 PPPPPXPXXPPXP 912
PPPP P PP P
Sbjct: 273 PPPPATPSQPPRP 285
Score = 24.2 bits (50), Expect(2) = 0.044
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1
Query: 853 PPXXXPXPPPPPXP 894
P P PPPPP P
Sbjct: 184 PSDYNPPPPPPPPP 197
Score = 23.4 bits (48), Expect(2) = 0.59
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1
Query: 841 PXXXPPXXXPXPPPPP 888
P P P PPPPP
Sbjct: 229 PKQADPLPAPPPPPPP 244
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 32.7 bits (71), Expect = 0.076
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 557 TSRSCPPRTNXT*SSITRXVLVMXVSSTVIAPXTPFNTTGTLSPPXXXAXXMSFVXPP 730
TS PP T+ ++ T ++T + P T NTT T +PP + V PP
Sbjct: 67 TSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPP 124
Score = 29.9 bits (64), Expect = 0.54
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +2
Query: 527 LPPCWXTPXFTSRSCPPRTNXT*SSITRXVLVMXVSSTVIAPXTPFNTTGTLSPPXXXAX 706
+PP + T+ + PP T+ ++ + ++T P T N+T T+ PP
Sbjct: 70 VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVN 129
Query: 707 XMSFVXP 727
+ V P
Sbjct: 130 TTTVVPP 136
Score = 29.9 bits (64), Expect = 0.54
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 557 TSRSCPPRTNXT*SSITRXVLVMXVSSTVIAPXTPFNTTGTLSPPXXXAXXMSFV 721
T+ + PP T+ S+ T V++T + P T T T+ PP A SFV
Sbjct: 105 TTTTAPPTTHVN-STTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANTTSFV 158
Score = 27.9 bits (59), Expect = 2.2
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +2
Query: 527 LPPCWXTPXFTSRSCPPRTNXT*SSITRXVLVMXVSSTVIAPXTPFNTTGTLSPPXXXAX 706
+PP T T+ + PP T+ ++ T S+T + P T T T+ PP
Sbjct: 84 VPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVN 141
Query: 707 XMSFVXP 727
+ V P
Sbjct: 142 TTTVVPP 148
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 853 PPXXXPXPPPPPXPXXPPXPXPXPPXP 933
PP PPPP P P P PP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 30.3 bits (65), Expect = 0.41
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +1
Query: 841 PXXXPPXXXPXPPP--PPXPXXPPXPXPXPPXP 933
P PP PPP PP P PP P PP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP-SAPPPPLP 1736
Score = 29.9 bits (64), Expect = 0.54
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +1
Query: 841 PXXXPPXXXPXPPPPPXPXXPPXPXPXPPXP 933
P P P PPP P P P PP P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +1
Query: 841 PXXXPPXXXPXPPPPPXPXXPPXPXPXPPXP 933
P PP P P P PP P P P
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.13
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 841 PXXXPPXXXPXPPPPPXPXXPPXPXPXPPXP 933
P P P PPPPP P P PP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 30.7 bits (66), Expect = 0.31
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Frame = +1
Query: 841 PXXXPPXXXPXPPPPPXPXXPPXP---XPXPPXP 933
P P P P P P P PP P P PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 29.9 bits (64), Expect = 0.54
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 856 PXXXPXPPPPPXPXXPPXPXPXP 924
P P PPP P PP P P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPP 768
Score = 29.9 bits (64), Expect = 0.54
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 868 PXPPPPPXPXXPPXPXPXPPXP 933
P PPPPP P P PP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.71
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Frame = +1
Query: 841 PXXXPPXXXPXPPPPPXP-----XXPPXPXPXPP 927
P P PPPPP P PP P P PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 856 PXXXPXPPPPPXPXXPPXPXPXPP 927
P P P PPP P P P PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 840 PXXFXPXXXPGXPPPPPXXXXPXXPPPPP 926
P P P P PP PPPPP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 869 RXPPPPPXXSXPPXPXPXP 925
+ PPPPP P P P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAP 748
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.71
Identities = 17/56 (30%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Frame = +1
Query: 769 PPXXXPXLGXXXXXXXXXXXSXXXPXXXPPXXXPXPP-PPPXPXXPPXPXPXPPXP 933
PP P L S P PP PP P PP P P P P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +1
Query: 841 PXXXPPXXXPXPPPPPXPXXPPXPXPXPPXP 933
P PP P PP P P PP P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 868 PXPPPPPXPXXPPXPXPXPP 927
P PPPPP P P PP
Sbjct: 3 PAPPPPPPAPAPAAAAPAPP 22
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Frame = +1
Query: 853 PPXXXPXPP--PPPXPXX-PPXPXPXPPXP 933
PP P P PPP P PP P PP P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +1
Query: 841 PXXXPPXXXPXPPPPPXPXXPPXPXPXPPXP 933
P PP P P P P P PP P
Sbjct: 168 PSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -2
Query: 932 GXGGXGXGXGGXXGXGGGGGXGXXXGGKXXG 840
G GG G GG G GG G GG G
Sbjct: 139 GRGGFRGGRGGSRGGFGGNSRGGFGGGSRGG 169
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -2
Query: 932 GXGGXGXGXGGXXGXG-GGGGXGXXXGGKXXG 840
G GG G GG G GGG G GG G
Sbjct: 146 GRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 178 QLYMSVVIGEY-ETAIAKCSEYLKEKXGEVIKEAVKRLIE 294
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 932 GXGGXGXGXGGXXGXGGGGGXGXXXGGK 849
G G G GG G GGG G GG+
Sbjct: 20 GFNGGRGGFGGGRGGARGGGRGGARGGR 47
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 926 GGXGXGXGGXXGXGGGGGXGXXXGGK 849
GG G GG G GGG G G GG+
Sbjct: 16 GGRGGFNGGRGGFGGGRG-GARGGGR 40
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.0 bits (47), Expect(2) = 3.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 868 PXPPPPPXP 894
P PPPPP P
Sbjct: 945 PPPPPPPPP 953
Score = 22.2 bits (45), Expect(2) = 3.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 856 PXXXPXPPPPP 888
P P PPPPP
Sbjct: 942 PAFPPPPPPPP 952
Score = 21.8 bits (44), Expect(3) = 3.6
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 892 PXXPPXPXPXPP 927
P PP P P PP
Sbjct: 942 PAFPPPPPPPPP 953
Score = 20.6 bits (41), Expect(3) = 3.6
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +1
Query: 868 PXPPPPP 888
P PPPPP
Sbjct: 905 PTPPPPP 911
Score = 20.6 bits (41), Expect(3) = 3.6
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +1
Query: 874 PPPPPXP 894
PPPPP P
Sbjct: 908 PPPPPLP 914
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +3
Query: 855 PXXXPGXPPPPPXXXXPXXPPPPP 926
P P P P P PPPPP
Sbjct: 725 PQVTPAPPTPAPTPAVKHHPPPPP 748
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Frame = +1
Query: 841 PXXXPPXXXPXPPPPPXPXXPPXPXP--XPPXP 933
P PP P P P P PP P P PP P
Sbjct: 1189 PPVPPPSEAP-PVPKPSVGVPPVPPPSTAPPVP 1220
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Frame = +1
Query: 829 SXXXPXXXPPXXXPXPPPPPXPXXPPXPXP---XPPXP 933
S P PP P P P P PP P P PP P
Sbjct: 1204 SVGVPPVPPPSTAP-PVPTPSAGLPPVPVPTAKAPPVP 1240
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -2
Query: 314 MXFLLPFSIRRFTASLITSPXFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 135
M F ++ T + +P FR+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAP---FRHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 134 EASAHTARTKA 102
+A A T A
Sbjct: 58 NGAAKEAATAA 68
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.2 bits (55), Expect = 6.6
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = -2
Query: 272 SLITSPXFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 111
+LI SP S S ++ V S M L+Y+ S + +S+ A + L+ + T
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343
Query: 110 TKANKVSLI 84
+ N VSLI
Sbjct: 344 FQENVVSLI 352
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 868 PXPPPPPXPXXPPXPXPXPPXP 933
P P PP P P P PP P
Sbjct: 164 PNPAMPPIPFLPFNPAAQPPFP 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,716
Number of Sequences: 5004
Number of extensions: 53666
Number of successful extensions: 532
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -