Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C20
         (933 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   0.91 
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    24   1.7  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    24   1.7  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    24   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   2.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect(2) = 0.91
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 853 PPXXXPXPPPP 885
           PP   P PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 901 PPXPXPXPPXP 933
           PP P P PP P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 867 PGXPPPPPXXXXP 905
           P  PPPPP    P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 21.0 bits (42), Expect(2) = 0.91
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 868 PXPPPPPXPXXPP 906
           P PPPPP     P
Sbjct: 341 PAPPPPPPSSSGP 353


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 217 AIAKCSEYLKEKXGEVIKEAVKRLIENGKRNXMDFAYQLWTKDGKEIVK 363
           A+A   +   +K  EVIK+ +K L+EN K    D     +  D K  VK
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVEN-KPELWDSLANKYDPDKKYRVK 118


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 217 AIAKCSEYLKEKXGEVIKEAVKRLIENGKRNXMDFAYQLWTKDGKEIVK 363
           A+A   +   +K  EVIK+ +K L+EN K    D     +  D K  VK
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVEN-KPELWDSLANKYDPDKKYRVK 118


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 217 AIAKCSEYLKEKXGEVIKEAVKRLIENGKRNXMDFAYQLWTKDGKEIVK 363
           A+A   +   +K  EVIK+ +K L+EN K    D     +  D K  VK
Sbjct: 71  ALATDCKKCTDKQREVIKKVIKFLVEN-KPELWDSLANKYDPDKKFRVK 118


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect(2) = 2.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 868  PXPPPPP 888
            P PPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 20.6 bits (41), Expect(2) = 2.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 874  PPPPPXP 894
            PPPPP P
Sbjct: 1356 PPPPPPP 1362


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 853 PPXXXPXPPPPPXPXXPPXPXP 918
           PP     PPP   P  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,242
Number of Sequences: 438
Number of extensions: 6397
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)