Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C18
         (980 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    31   1.4  
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704...    30   2.5  
03_02_0197 + 6337212-6337278,6339261-6340517,6340599-6340626,634...    30   3.2  
04_03_0513 - 16681227-16683936,16685572-16685966                       29   4.3  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    29   5.7  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = +3

Query: 816  PPPXXSPAXGGTPGXXXXPSXATPXGXXXFXXXPP-NXXXPXPPGG 950
            PPP      GG P     P+   P G       PP     P PPGG
Sbjct: 1187 PPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGG 1232


>12_02_0118 -
           13869237-13869307,13869375-13869465,13870321-13870440,
           13870668-13870795,13871159-13871270,13871719-13871817,
           13871918-13871992,13872099-13872320,13873177-13874034
          Length = 591

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = +3

Query: 804 LSXXPPPXXSPAXGGTPGXXXXPSXATPXGXXXFXXXPPNXXXPXPP 944
           +S  PPP   P   G          A P G   F   PP    P PP
Sbjct: 36  VSRAPPPFAPPGGNGPVPSSIRAPQAPPPGARPFPGSPPPPSQPPPP 82


>03_02_0197 +
           6337212-6337278,6339261-6340517,6340599-6340626,
           6340735-6340897
          Length = 504

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 290 MKAYENFMMMYKVGFLPKNLEFSIFYE-KMREEAIALFKLFYYAKDFECFYKTACYARVY 466
           +  Y  +  M   G +P  L++++F      +EA+    L +Y   F+     A +A  Y
Sbjct: 197 LNVYPYYDYMRSNGVIP--LDYALFRPLPPNKEAVDANTLLHYTNVFDAVVDAAYFAMAY 254

Query: 467 MNQXNVLIRLLHSYYP 514
           +N  NV + +  + +P
Sbjct: 255 LNVTNVPVMVTETGWP 270


>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 268  QQGLLHKHESLRKFHDDVQGRIPSQEFGILDLL 366
            Q G+LH+ ESL    +D+ G IP QE   LD L
Sbjct: 905  QLGMLHQLESLDLSSNDLSGEIP-QELASLDFL 936


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
 Frame = +3

Query: 804 LSXXPPPXXSPAX-GGTPGXXXXPSXATPXGXXXFXXXPPNXXXPXPP 944
           L   PPP   PA   G PG    P    P G       P     P PP
Sbjct: 229 LPPPPPPPPKPANIAGAPGLPLPPPPPPPPGPPPREIVPGQTLLPPPP 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,652,569
Number of Sequences: 37544
Number of extensions: 379923
Number of successful extensions: 799
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)