Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C18
         (980 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   6.7  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   6.7  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   6.7  
Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    28   8.8  
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U55373-5|AAC25888.1|  289|Caenorhabditis elegans Collagen protei...    28   8.8  

>Z99773-3|CAE11316.1|  305|Caenorhabditis elegans Hypothetical
           protein H06A10.2 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +3

Query: 819 PPXXSPAXGGTPGXXXXPSXATPXGXXXFXXXPPNXXXPXPPG 947
           PP   P   G PG       A P G       P     P PPG
Sbjct: 149 PPPCQPCPAGPPGPPGPDGPAGPAGPDGEAGSPAAPSPPGPPG 191


>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +3

Query: 819 PPXXSPAXGGTPGXXXXPSXATPXGXXXFXXXPPNXXXPXPPG 947
           PP   P   G PG       A P G       P     P PPG
Sbjct: 148 PPPCKPCPAGPPGPPGPDGPAGPAGPDGEAGSPAAPSPPGPPG 190


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = +3

Query: 816 PPPXXSPAXGGTPGXXXXPSXATPXGXXXFXXXPPNXXXPXPP 944
           PPP  SP   G+      P+  +P         PP    P PP
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 283


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = +3

Query: 816 PPPXXSPAXGGTPGXXXXPSXATPXGXXXFXXXPPNXXXPXPP 944
           PPP  SP   G+      P+  +P         PP    P PP
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 304


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = +3

Query: 816 PPPXXSPAXGGTPGXXXXPSXATPXGXXXFXXXPPNXXXPXPP 944
           PPP  SP   G+      P+  +P         PP    P PP
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPP 289


>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -2

Query: 427 KIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHEIF--VGFH 290
           +I+G       RDG F HF V K +E +Q LG  ++ V H E+F  V +H
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDELFDLVAYH 471


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -2

Query: 427 KIFGIIEQLEQRDGFFPHFFV-KDRE-FQILGKESDLVHHHEIF--VGFH 290
           +I+G       RDG F HF V K +E +Q LG  ++ V H E+F  V +H
Sbjct: 424 RIWGYTVSYASRDGSFKHFLVEKIKEGYQFLG--TNQVVHDELFDLVAYH 471


>U55373-5|AAC25888.1|  289|Caenorhabditis elegans Collagen protein
           140, isoform a protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +3

Query: 843 GGTPGXXXXPSXATPXGXXXFXXXPPNXXXPXPPG 947
           GG PG    P  A P G       P     P PPG
Sbjct: 189 GGRPGNPGRPGPAGPRGEPGTEYKPGQPGRPGPPG 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,179,499
Number of Sequences: 27780
Number of extensions: 334094
Number of successful extensions: 1273
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)