Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C18
         (980 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01630.1 68415.m00089 glycosyl hydrolase family 17 protein / ...    31   0.88 
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t...    29   4.7  
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    28   8.2  
At5g24040.1 68418.m02824 F-box family protein similar to unknown...    28   8.2  

>At2g01630.1 68415.m00089 glycosyl hydrolase family 17 protein /
           beta-1,3-glucanase, putative similar to
           beta-1,3-glucanase GI:15150341 from [Camellia sinensis]
          Length = 501

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 290 MKAYENFMMMYKVGFLPKNLEFSIFYE-KMREEAIALFKLFYYAKDFECFYKTACYARVY 466
           +  Y  F  +   G +P  L++++F   +  +EA+    L +Y   F+     A +A  Y
Sbjct: 194 LNVYPYFDYVQSNGVIP--LDYALFQPLQANKEAVDANTLLHYTNVFDAIVDAAYFAMSY 251

Query: 467 MNQXNVLIRLLHSYYPA 517
           +N  N+ I +  S +P+
Sbjct: 252 LNFTNIPIVVTESGWPS 268


>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 428

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/51 (27%), Positives = 17/51 (33%)
 Frame = +3

Query: 792 PKXXLSXXPPPXXSPAXGGTPGXXXXPSXATPXGXXXFXXXPPNXXXPXPP 944
           P   +   PPP   P    T      P+  TP     +   PP    P PP
Sbjct: 99  PPPTVKPPPPPYVKPPPPPTVKPPPPPTPYTPPPPTPYTPPPPTVKPPPPP 149


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +2

Query: 260 IEASKDCYTNMKAYENFMMMYKVGFLPKNLEFSIF---YEKMR--EEAIALFK 403
           I  +K C    KA E F  MYK G +P  + +S     Y K    EE ++L++
Sbjct: 228 ITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYE 280


>At5g24040.1 68418.m02824 F-box family protein similar to unknown
           protein (gb|AAD22308.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 373

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 445 CFVETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKES 329
           C+ E F++F  I + E+R GF      K+ E+ ILGK S
Sbjct: 137 CYSEWFELFECISKCEERIGFMGLNREKN-EYMILGKLS 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,111,213
Number of Sequences: 28952
Number of extensions: 302065
Number of successful extensions: 832
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2382734760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)