Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C17
         (919 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    24   1.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   7.7  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
 Frame = +3

Query: 531 EVYPPCWKTT----EFTSRSCPPRTNST 602
           EVY PCW  T     +  ++  PRT  T
Sbjct: 380 EVYIPCWNATPEIITYLEKNGKPRTTDT 407


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 517 CWFCLWSHRMQFCCXFV 467
           C F +++  + FCC F+
Sbjct: 171 CAFIIFTMHLLFCCAFI 187


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 521  KSPGSLPPVLENNRVYFKIMSTEDQQYLKLXNTK 622
            K P     ++E   VY+K +ST+D+  +K  + K
Sbjct: 1222 KPPVEPNGIVEYYTVYYKPVSTDDKTEVKPTSQK 1255


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,659
Number of Sequences: 336
Number of extensions: 3754
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25651384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)