Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_C17
(919 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.92
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 2.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.7
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 27 4.9
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 26 6.5
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 26 8.6
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 8.6
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 8.6
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.92
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 220 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 363
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 187 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 303
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +3
Query: 543 PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGT 689
P T+ TS S PP NST + +T V + SST P P++T+ T
Sbjct: 279 PTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP-PPASTSST 325
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +3
Query: 543 PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGT 689
P T+ TS S PP NST + +T V + SST P P++T+ T
Sbjct: 333 PSTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP-PPASTSST 379
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Frame = +3
Query: 774 PXXRPSNLGPXXXXR-SPHXXPXS-PXXXSXXPXPSTXPXXXPPPL 905
P RP + P +P P S P S P P+ P PPPL
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 703 HGGLKVPVVFEGVSGAITVDDTVIT 629
H + V G+ GAIT+DD++IT
Sbjct: 109 HLSIGQEAVAAGIEGAITLDDSIIT 133
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 487 AFGDSKDKTSKKVSWKFTPRVGKQQSLLQDHVHRGPTV 600
+F S K ++ + +FTP+ G + L+ H GP +
Sbjct: 236 SFSSSISKKRRRKNAEFTPQAGARSPLILCEGHTGPVM 273
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 8.6
Identities = 15/68 (22%), Positives = 31/68 (45%)
Frame = -3
Query: 224 VSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQWLSLKASGEQXQI 45
++ SP+T L+ CS+ T +V + ++ N + L + L + Q Q+
Sbjct: 10 LALSPITHLLKRCSSVTDNVHRVNYCYNYHTVPNLSQRNLLPLFSPEALDIAWDQHQRQV 69
Query: 44 LREFREXV 21
++E + V
Sbjct: 70 VKELNDRV 77
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 8.6
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = -3
Query: 281 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKV 102
SL+ S FFS YSE + + + IYS S S S+ + A+ + + ++V
Sbjct: 6 SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL---NPAIYVNWTEPWGQEDEV 62
Query: 101 SLILAQWLSLKASG 60
+++ W ++ G
Sbjct: 63 EVLIFNWKEIRKLG 76
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -3
Query: 323 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 144
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 143 EASAHTARTKA 111
+A A T A
Sbjct: 58 NGAAKEAATAA 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,482
Number of Sequences: 5004
Number of extensions: 61608
Number of successful extensions: 218
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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