Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_C15
(949 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.078
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.14
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.31
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.55
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 2.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 8.9
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.7 bits (71), Expect = 0.078
Identities = 22/76 (28%), Positives = 28/76 (36%)
Frame = +3
Query: 564 PGTRTKARVAGVFP*XPPPCXTIPKIDPPLKGGXXPPXLSXSPPXSPPXXXPRCRPSXXP 743
PG T A P P P +P P + P ++ PP S P PS
Sbjct: 1463 PGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSS---VAPATAPSSTL 1519
Query: 744 TPGPLXRAHLSAPXPP 791
P AH+ +P PP
Sbjct: 1520 PPSQSSFAHVPSPAPP 1535
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Frame = +3
Query: 615 PPCXTIPKIDPPLKGGXXP---PXLSXSPPXSPPXXXPRCRPSXXPTPG 752
PP + P PP P P + PP +PP P P PG
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +3
Query: 669 PPXLSXSPPXSPPXXXPRCRPSXXPTPGPLXRAHLSAPXPPXR 797
PP +S PP S P P PS P P P A S P P R
Sbjct: 1709 PPPMSVPPPPSAPPM-PAGPPSAPPPPLPASSAP-SVPNPGDR 1749
Score = 27.5 bits (58), Expect = 2.9
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +3
Query: 633 PKIDPPLKG-GXXPPXLSXSPPXSPPXXXPRCRPSXXPTP-GPLXRAHLSAPXPP 791
P PP++ PP +S P PP P PS P P GP SAP PP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPP-PPSAPPMPAGP-----PSAPPPP 1734
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.14
Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Frame = +3
Query: 603 P*XPPPCXTIPKIDP-PLKGGXXPPXLSXSPPXSPPXXXPRCRPSXXPTPGPLXRAHLSA 779
P PPP +P P P+ P + PP PP P P P P A S
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Query: 780 PXPPXREXXXXP 815
P + P
Sbjct: 792 YYAPAPQAEPEP 803
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.31
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +3
Query: 603 P*XPPPCXTIPKIDPPLKGGXXPPXLSXSPPXSPPXXXPRC-RPSXXPTPGPLXRAHLSA 779
P P P +P + PP + P PP PP P PS P P+ A A
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTA--KA 1236
Query: 780 PXPP 791
P P
Sbjct: 1237 PPVP 1240
Score = 27.5 bits (58), Expect = 2.9
Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Frame = +3
Query: 603 P*XPPPCXTIPKIDPPLKGGXXPPXLSXSPP-XSPPXXXPRCRPSXXPTPGPLXRAHLSA 779
P P P IP + P G P S +PP P P P P P A L
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Query: 780 PXPPXREXXXXP 815
P + P
Sbjct: 1229 VPVPTAKAPPVP 1240
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Frame = +3
Query: 603 P*XPPPCXTIPKIDPPLKGGXXP-PXLSXSPPXSPPXXXPRCRPSXXPTPGPLXRAHLSA 779
P P P +P + P P P ++ P P P +PS P P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161
Query: 780 PXP 788
P P
Sbjct: 1162 PKP 1164
Score = 25.8 bits (54), Expect = 8.9
Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Frame = +3
Query: 603 P*XPPPCXTIPKIDPPLKG-GXXPPXLSXSPPXSPPXXXPRC-RPSXXPTPGPLXRAHLS 776
P P P P + P G P + PP PP P +PS P P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Query: 777 APXP 788
P P
Sbjct: 1219 VPTP 1222
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.55
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Frame = +3
Query: 561 RPGTRTKARVAGVFP*XPPPCXTIPKIDPPLKGGXXPPXLSXSPPXSPP--XXXPRCRPS 734
RP T R + + P P IP PP+ PP +P SPP P P
Sbjct: 138 RPPTSAPPRPS-IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196
Query: 735 XXP--TPGPLXRA 767
P P PL +A
Sbjct: 197 MPPKVPPPPLSQA 209
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/63 (30%), Positives = 23/63 (36%)
Frame = +3
Query: 603 P*XPPPCXTIPKIDPPLKGGXXPPXLSXSPPXSPPXXXPRCRPSXXPTPGPLXRAHLSAP 782
P PPP P PP+ PP S PP + P + PS P + P
Sbjct: 147 PSIPPPS---PASAPPIPS-KAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
Query: 783 XPP 791
PP
Sbjct: 203 PPP 205
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 612 PPPCXTIPKIDPPLKGGXXPPXLSXSP 692
PP ++P PP+ PP LS +P
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = +3
Query: 537 TXDQKAXXRPGTRTKARVAGVFP*XPPPCXTIPKIDPPLKGGXXPPXLSXSPPXSPPXXX 716
T K P + + + P PP T+PK++P L+GG S + P +P
Sbjct: 428 TTSPKVNPEPHSESISDTRPSTPRKVPPS-TVPKMNPKLQGGN-----SVTAPSTPSKVL 481
Query: 717 PRCRPSXXP 743
P P P
Sbjct: 482 PAMSPKVAP 490
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Frame = +3
Query: 633 PKIDPPLKGGXXPPXLSXSPPXSPPXXXPRCRPSXXPTPGPL--XRAHLSAPXPP 791
P PP L +PP PR PS P PL RA + P PP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
Score = 27.1 bits (57), Expect = 3.9
Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Frame = +3
Query: 564 PGTRTKARVAGVFP*XPPPCXTIPKIDPPLK----GGXXPPXLS----XSPPXSPPXXXP 719
P ++ AG P PP + P PP G PP S +PP PP
Sbjct: 339 PPPPPRSNAAGSIP-LPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 720 RCRPSXXPTPGPLXRAHLSAPXPP 791
R P+ P + P PP
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPP 421
Score = 25.8 bits (54), Expect = 8.9
Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Frame = +3
Query: 615 PPCXTIPKIDPPLKGGXXPPXLSXSPPXSPPXXXPRC--RPSXXPTPGPLXRAHLSAPXP 788
PP T P + P PP L S P S P P P P PL +AP
Sbjct: 415 PPVPTPPSLPPSA-----PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPL 469
Query: 789 P 791
P
Sbjct: 470 P 470
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 8.9
Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Frame = -1
Query: 850 GXRRRAGGXXXXGXXXXSRKGGXGAXR*ARXRGPGVGXXXGRQ--RGXXXGGEXGGDXDR 677
G R GG +GG G R RG G G G + RG GG G R
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGR-GGARGGGRGGARGGRGGRGGARGGRGGSSGGR 64
Query: 676 XG 671
G
Sbjct: 65 GG 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,650
Number of Sequences: 5004
Number of extensions: 28535
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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