Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C14
         (966 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
 Frame = +1

Query: 697 GCXXVSPLKLSVPHRXXXPPXSPX--PXXGPPXPPTXSLXPPXGXXPXP 837
           G   VSP+ +S        P      P  G P PP  ++    G  P P
Sbjct: 385 GVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLP 433


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 724  LSVPHRXXXPPXSPXP 771
            +SVP +   PP SP P
Sbjct: 1277 VSVPQQQQLPPSSPQP 1292


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +1

Query: 148 RQIGQNKEEP*ECQVQGSMLKVPVHPGHH 234
           R  G+  E+P  C + G    VP     H
Sbjct: 82  RSHGKEGEDPYRCNICGKTFAVPARLTRH 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,744
Number of Sequences: 438
Number of extensions: 4629
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31806957
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)