Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C10
         (1021 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   3.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.6  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   8.7  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/23 (39%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -2

Query: 204 GLSKLINVSNXKIEIQ-LTLNKG 139
           G+S L+N+ N ++E++ + LN G
Sbjct: 476 GISSLLNLDNQQLELKPIDLNSG 498


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +2

Query: 962  PHLPPXXXPAXXPPPPXPHN 1021
            P  P        PPPP PH+
Sbjct: 724  PLTPHEAFDVKLPPPPHPHH 743


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +2

Query: 962  PHLPPXXXPAXXPPPPXPHN 1021
            P  P        PPPP PH+
Sbjct: 616  PLTPHEAFDVKLPPPPHPHH 635


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 686 PDYNPHQGPSPXEXP 730
           P YN H G +P + P
Sbjct: 25  PHYNIHHGATPPQSP 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,500
Number of Sequences: 336
Number of extensions: 1643
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 28970257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)