Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C09
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    30   0.52 
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    29   0.69 
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    27   2.8  

>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 392 MVSKIYXFCGLKFSCLKGFDSGVTLIFPVASDTSXXI 502
           + S IY +CGL   CL  ++  +     V +DTS  I
Sbjct: 185 LTSPIYAYCGLANFCLGDYEEALAHFLKVETDTSDGI 221


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -3

Query: 405 ILDTIXGNIYVWIGKQATANEKXQAMTKAQELLNAKNYPSWVQVTR--VLQNTEPA-AFK 235
           I+D        W GK  +  +K  A +      + K +  W Q+TR  VLQ  + +  FK
Sbjct: 293 IVDLFLRFFLSWTGKNISETQKIVAYSHLYSFTSVKCFVHWAQITRRKVLQMYDDSPGFK 352

Query: 234 QYFFT 220
             ++T
Sbjct: 353 PSYYT 357


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -3

Query: 684 NQVRDQDHHGRGKVDIVDKYSSDVDVQKXFTAXGSGVKDLVPDESTGGDDQEFERNEASN 505
           N+  +       + D ++K   D ++    T    G KD VP +   GD+   E  EASN
Sbjct: 37  NEAPELSEDNDAQEDELEKLE-DAELFMFDTGSADGAKDSVPLDIIAGDNTVKEDEEASN 95

Query: 504 VI 499
            I
Sbjct: 96  EI 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,936
Number of Sequences: 5004
Number of extensions: 46127
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)