Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C09
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70755-3|CAA94782.1|  475|Caenorhabditis elegans Hypothetical pr...   122   5e-28
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    48   9e-06
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    48   9e-06
AC091125-4|AAK27888.1|  732|Caenorhabditis elegans Hypothetical ...    31   1.5  
AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical ...    29   3.5  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    29   6.1  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    29   6.1  

>Z70755-3|CAA94782.1|  475|Caenorhabditis elegans Hypothetical
           protein K06A4.3 protein.
          Length = 475

 Score =  122 bits (293), Expect = 5e-28
 Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 2/198 (1%)
 Frame = -3

Query: 798 IASMNKGDCFXFSXDNDIYVFVGEKAKNVEKLKAISXANQVRDQDHHGRGKVDIVDKYSS 619
           + S+N GD F      D+YV++  ++  +E++K ++ A  + D +  G  KV I+D    
Sbjct: 155 VNSLNLGDVFILDLGKDLYVWMPPESGRLERIKGMARAKNIADHERMGIPKVHILDDVEW 214

Query: 618 DVDVQKXFTAXGSGVKDLVPDESTGGDDQEFERNEASNVIXFEVSDATGKIKVTPLSKP- 442
           D D    F +   GV  +        DD  + +     +  ++VSDA+G  KV+ +S+  
Sbjct: 215 DND--STFWSYFGGVSSVRKVSKGKDDDDNYWKRLTEQITLWKVSDASGAAKVSMVSQGE 272

Query: 441 -FKQENLSPQNXYILDTIXGNIYVWIGKQATANEKXQAMTKAQELLNAKNYPSWVQVTRV 265
             ++E L P++ +ILD I G I+VWIG + T  E+ +A+   Q  L   + P W QVTRV
Sbjct: 273 NIRKEQLDPKDAFILDAINGGIFVWIGHECTLEERSKALIWGQNYLKQHHLPRWTQVTRV 332

Query: 264 LQNTEPAAFKQYFFTWRD 211
           L++ E   F Q+F  W D
Sbjct: 333 LESAESTQFTQWFRDWVD 350



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
 Frame = -3

Query: 501 IXFEVSDATGKIKVTPLSKPFKQENLSPQNXYILDTIXGNIYVWIGKQATANEKXQAMTK 322
           + F+VSD +G + V  ++  F QE+L   +  ILD +  +IYVW+G  A ANEK +A+  
Sbjct: 360 LLFQVSDESGLLHVEEIAN-FTQEDLDGDDVMILDAL-NSIYVWVGANANANEKKEALNT 417

Query: 321 AQELLNAKNYP--SWVQVTRVLQNTEPAAFKQYFFTWRD 211
           A+  L     P      +  + Q  EP  FK++F +W D
Sbjct: 418 AKLYLEKDKLPRHKKTAIDTIFQGKEPPTFKKFFPSWDD 456


>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I homolog
            protein.
          Length = 1257

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 42/198 (21%), Positives = 82/198 (41%), Gaps = 4/198 (2%)
 Frame = -3

Query: 798  IASMNKGDCFXFSXDNDIYVFVGEKAKNVEKLKAISXANQVRDQDHHGRGKVDIVDKYSS 619
            + S++   CF       I+++ G K++     KA   A ++  +D  G+ +++   +   
Sbjct: 650  VESLDPRFCFLLDAGETIWIWSGYKSRITVSNKARLFAERLNKRDRKGKSEIETCRQARC 709

Query: 618  DVDVQKXFTAXGSGVKDLVPDESTGGDDQEF-ERNEASNVIXFEVSDATGKIKVTPLSKP 442
              +  +  T          PD+  G   +   E   A     ++V+   G +++  +  P
Sbjct: 710  PPEFWQALTGN--------PDKPQGAIVEHVPEGFVAERKKLYKVNIGMGFLELPQVELP 761

Query: 441  ---FKQENLSPQNXYILDTIXGNIYVWIGKQATANEKXQAMTKAQELLNAKNYPSWVQVT 271
                KQ+ L  +  ++LD+   +I++WIGK+A    K        EL    + P + QV 
Sbjct: 762  KGIAKQDMLGSKGVFVLDS-NSDIFLWIGKKANRLLKMAGQKLVVELHQMIDRPDYAQVY 820

Query: 270  RVLQNTEPAAFKQYFFTW 217
            R  +  E   F+  F  W
Sbjct: 821  RETEGEESMMFRSKFAGW 838


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
            flightless) homologprotein 1 protein.
          Length = 1257

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 42/198 (21%), Positives = 82/198 (41%), Gaps = 4/198 (2%)
 Frame = -3

Query: 798  IASMNKGDCFXFSXDNDIYVFVGEKAKNVEKLKAISXANQVRDQDHHGRGKVDIVDKYSS 619
            + S++   CF       I+++ G K++     KA   A ++  +D  G+ +++   +   
Sbjct: 650  VESLDPRFCFLLDAGETIWIWSGYKSRITVSNKARLFAERLNKRDRKGKSEIETCRQARC 709

Query: 618  DVDVQKXFTAXGSGVKDLVPDESTGGDDQEF-ERNEASNVIXFEVSDATGKIKVTPLSKP 442
              +  +  T          PD+  G   +   E   A     ++V+   G +++  +  P
Sbjct: 710  PPEFWQALTGN--------PDKPQGAIVEHVPEGFVAERKKLYKVNIGMGFLELPQVELP 761

Query: 441  ---FKQENLSPQNXYILDTIXGNIYVWIGKQATANEKXQAMTKAQELLNAKNYPSWVQVT 271
                KQ+ L  +  ++LD+   +I++WIGK+A    K        EL    + P + QV 
Sbjct: 762  KGIAKQDMLGSKGVFVLDS-NSDIFLWIGKKANRLLKMAGQKLVVELHQMIDRPDYAQVY 820

Query: 270  RVLQNTEPAAFKQYFFTW 217
            R  +  E   F+  F  W
Sbjct: 821  RETEGEESMMFRSKFAGW 838


>AC091125-4|AAK27888.1|  732|Caenorhabditis elegans Hypothetical
           protein Y67D2.6 protein.
          Length = 732

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 378 YVWIGKQATANEKXQA-MTKAQELLNAKNYPSWVQVTRVLQNT 253
           Y + GK  T  E     M K   ++  K+YP WV  T V+Q++
Sbjct: 643 YHYTGKYMTVKESFPFNMYKGSSIMFKKDYPKWVIFTEVMQDS 685


>AL023844-6|CAA19532.1|  551|Caenorhabditis elegans Hypothetical
           protein Y48A6B.8 protein.
          Length = 551

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 660 HGRGKVDIVDKYSSDVDVQ-KXFTAXGSGVKDLVPDESTGGDDQEFERNEASNVIXFEVS 484
           HG G  D ++    D ++  + +   G+G +D V +E  G ++QE E N A   +  E+S
Sbjct: 85  HGYGIEDDIEDEIDDEELDDEEYEESGNGNEDEV-EEEVGVEEQEIENNFAYKKVKSEIS 143


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/79 (24%), Positives = 34/79 (43%)
 Frame = -3

Query: 636  VDKYSSDVDVQKXFTAXGSGVKDLVPDESTGGDDQEFERNEASNVIXFEVSDATGKIKVT 457
            VD+  S+    +      S V  ++ ++S      E E+   SN+    +S     +  T
Sbjct: 2806 VDQQISEHQTLEVIANIKSAVSSVISNDSVLSKRSEDEKAVISNIANLIISCDLASMSST 2865

Query: 456  PLSKPFKQENLSPQNXYIL 400
              S  F+++ L PQN  +L
Sbjct: 2866 SNSFEFQRDILEPQNANVL 2884


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/79 (24%), Positives = 34/79 (43%)
 Frame = -3

Query: 636  VDKYSSDVDVQKXFTAXGSGVKDLVPDESTGGDDQEFERNEASNVIXFEVSDATGKIKVT 457
            VD+  S+    +      S V  ++ ++S      E E+   SN+    +S     +  T
Sbjct: 2806 VDQQISEHQTLEVIANIKSAVSSVISNDSVLSKRSEDEKAVISNIANLIISCDLASMSST 2865

Query: 456  PLSKPFKQENLSPQNXYIL 400
              S  F+++ L PQN  +L
Sbjct: 2866 SNSFEFQRDILEPQNANVL 2884


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,397,552
Number of Sequences: 27780
Number of extensions: 260371
Number of successful extensions: 622
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)