Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C08
         (1336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863...    34   0.22 
09_01_0067 + 1001137-1002708,1003476-1003529                           32   0.89 
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093...    30   3.6  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    30   4.7  
12_02_0299 - 17051570-17052474,17053542-17053755                       29   6.3  
11_01_0359 - 2731522-2732346                                           29   8.3  

>01_03_0117 + 12684729-12685886,12685978-12686145,12686292-12686336,
            12686438-12687280
          Length = 737

 Score = 34.3 bits (75), Expect = 0.22
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = +1

Query: 970  PXLNPFXXPSXPPXXHHRXHPQXXPPXSPPXXXXRPXHXPXXSLSFXPXXA 1122
            P   P   P+     HH   P   PP  PP     P H P  S S  P  A
Sbjct: 172  PATPPQLSPANAHSTHHHAKPPSLPPAEPPVPSPSPEHPPRHSPSKPPAYA 222


>09_01_0067 + 1001137-1002708,1003476-1003529
          Length = 541

 Score = 32.3 bits (70), Expect = 0.89
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 994  PSXPPXXHHRXHPQXXPPXSPPXXXXRP 1077
            PS P   HHR  P+  PP SPP     P
Sbjct: 5    PSAPRYHHHRHPPRNPPPPSPPPADHAP 32


>01_06_1670 - 39007402-39008229,39008320-39008567,39009159-39009364,
            39009454-39011054
          Length = 960

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 979  NPFXXPSXPPXXHHRXHPQXXPPXSPP 1059
            NPF  P  PP   H   P   PP  PP
Sbjct: 407  NPFVQPPPPPTHTHGPPPPPPPPPPPP 433


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 18/60 (30%), Positives = 20/60 (33%)
 Frame = +1

Query: 910  PXXPFP*XXXPDXTXXPXXLPXLNPFXXPSXPPXXHHRXHPQXXPPXSPPXXXXRPXHXP 1089
            P  P P    P  +  P   P L P   P+ PP       P   PP  PP     P   P
Sbjct: 1138 PPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPP-PPLSPSLPPPPPPPPLPSGPPPQP 1196



 Score = 29.5 bits (63), Expect = 6.3
 Identities = 28/98 (28%), Positives = 30/98 (30%), Gaps = 4/98 (4%)
 Frame = +1

Query: 847  PAXPXXXTRXPSPRXSXMXXDPXXPFP*XXXPDXTXXPXXLPXLNP-FXXPSXPPXXHHR 1023
            P  P      P P  S     P  P P    P  T  P   P L+P    P  PP     
Sbjct: 1138 PPPPLPEGPPPLPSDSPPCQPPLPPSP----PPATPPPP--PPLSPSLPPPPPPPPLPSG 1191

Query: 1024 XHPQXXP---PXSPPXXXXRPXHXPXXSLSFXPXXAXY 1128
              PQ  P   P  PP     P      SL + P    Y
Sbjct: 1192 PPPQPAPPPLPIQPPPIPPPPVPSSPSSLGYQPPAPEY 1229


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 21/79 (26%), Positives = 22/79 (27%)
 Frame = +1

Query: 877  PSPRXSXMXXDPXXPFP*XXXPDXTXXPXXLPXLNPFXXPSXPPXXHHRXHPQXXPPXSP 1056
            P P        P    P    P     P   P L P   P  PP       P   PP  P
Sbjct: 271  PPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQLPPL--PHFPPLPSFYPSPPPPPPPPP 328

Query: 1057 PXXXXRPXHXPXXSLSFXP 1113
            P     P   P  +  F P
Sbjct: 329  PPPPSFPWPFPPLAPLFPP 347


>11_01_0359 - 2731522-2732346
          Length = 274

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +1

Query: 970  PXLNPFXXPSXPPXXHHRXHPQXXPPXSPPXXXXRPXHXP 1089
            P   P      PP   H  H    PP  PP     P H P
Sbjct: 42   PAPPPHSHSHPPPPPPHAYHHHHYPPPPPPHHHPYPPHPP 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,664,375
Number of Sequences: 37544
Number of extensions: 88336
Number of successful extensions: 570
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4190274720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)