Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C08
         (1336 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  31   1.6  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  

>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 20/74 (27%), Positives = 22/74 (29%)
 Frame = +1

Query: 910  PXXPFP*XXXPDXTXXPXXLPXLNPFXXPSXPPXXHHRXHPQXXPPXSPPXXXXRPXHXP 1089
            P  P P    P     P   P   P   P  PP       P   PP  PP     P   P
Sbjct: 373  PPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPP 432

Query: 1090 XXSLSFXPXXAXYT 1131
               L+  P    +T
Sbjct: 433  ALRLACAPPRLRFT 446


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 17/60 (28%), Positives = 19/60 (31%)
 Frame = +1

Query: 910  PXXPFP*XXXPDXTXXPXXLPXLNPFXXPSXPPXXHHRXHPQXXPPXSPPXXXXRPXHXP 1089
            P  P P    P     P   P   P   P  PP  +    P   PP  PP     P + P
Sbjct: 165  PNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYPP 224



 Score = 30.3 bits (65), Expect = 3.6
 Identities = 19/67 (28%), Positives = 23/67 (34%)
 Frame = +1

Query: 877  PSPRXSXMXXDPXXPFP*XXXPDXTXXPXXLPXLNPFXXPSXPPXXHHRXHPQXXPPXSP 1056
            PSP  +     P  P+P    P     P   P   P+  P  PP  +    P   PP  P
Sbjct: 142  PSPN-APYPPPPNPPYPPPLYPPPPNPP---PPNAPYPPPPYPPPPNPPYPPPPNPPYPP 197

Query: 1057 PXXXXRP 1077
            P     P
Sbjct: 198  PPNAPNP 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,838,920
Number of Sequences: 59808
Number of extensions: 69143
Number of successful extensions: 309
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 4247130600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)