Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C07
         (924 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39907| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_37831| Best HMM Match : MAM (HMM E-Value=0)                         30   2.3  
SB_8910| Best HMM Match : MAM (HMM E-Value=1.9)                        30   2.3  
SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    28   9.3  

>SB_39907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 157 RPSTFTTRARTLGLSILACNIELNTINTRAP--KLACXEKQILR 32
           RPS     ART     L     L+TINTR+P  +L C  + +LR
Sbjct: 548 RPSGLAIGARTRPKRHLPLGTSLSTINTRSPRRRLRCIARHLLR 591


>SB_37831| Best HMM Match : MAM (HMM E-Value=0)
          Length = 563

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 153 GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 263
           G  G + Q  QV + + GET + ++  V+G    GDI
Sbjct: 151 GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI 187


>SB_8910| Best HMM Match : MAM (HMM E-Value=1.9)
          Length = 89

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 153 GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 263
           G  G + Q  QV + + GET + ++  V+G    GDI
Sbjct: 22  GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI 58


>SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 57  ASFGARVLIVLSSILQAKMDKPNVLARVVKVLGRTGSQGQC 179
           A  GAR + V  ++    +    VLAR  + L R G++G+C
Sbjct: 594 AVLGARAVCVAGALSARSLSGHAVLARSARALTRLGARGRC 634


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +2

Query: 65   WCTCVNC-IKLDITSQN--G*TQRSCSCRESTRPYWFSG 172
            WC C NC +KL I+ +       R C+ +   R  WF G
Sbjct: 2446 WCECSNCSLKLFISHKERMPMMHRVCNMQRKIRTSWFGG 2484


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -2

Query: 230  PDDLTAGLPNELDLHLSTLALRTSTAEYFHDTSKNVGFIHFGL*YRA*YN*HTCTKAGVX 51
            P +   GL   L + + +L L      +++ T K  G  H  L  RA  N  +C K+ V 
Sbjct: 2829 PKETNTGLIAGLVVGIISLCLVAVAGAWYY-TRKRKGSRHVQLKDRAQMNRSSCKKSSVE 2887

Query: 50   RKANLKD 30
            R  ++KD
Sbjct: 2888 RNVSVKD 2894


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,793,413
Number of Sequences: 59808
Number of extensions: 257331
Number of successful extensions: 551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2681370225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)