Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C07
         (924 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58682-1|AAB07066.1|   69|Homo sapiens ribosomal protein S28 pro...    87   6e-17
L05091-1|AAC15855.1|   69|Homo sapiens ribosomal protein S28 pro...    87   6e-17
CR457055-1|CAG33336.1|   69|Homo sapiens RPS28 protein.                87   6e-17
BC070218-1|AAH70218.1|   69|Homo sapiens ribosomal protein S28 p...    87   6e-17
BC070217-1|AAH70217.1|   69|Homo sapiens ribosomal protein S28 p...    87   6e-17
BC021239-1|AAH21239.1|   69|Homo sapiens ribosomal protein S28 p...    87   6e-17
BC000354-1|AAH00354.1|   69|Homo sapiens ribosomal protein S28 p...    87   6e-17
AB061846-1|BAB79484.1|   69|Homo sapiens ribosomal protein S28 p...    87   6e-17
AL023513-1|CAI19979.1|   57|Homo sapiens protein ( Human DNA seq...    43   0.002
AB209695-1|BAD92932.1| 1491|Homo sapiens N-methyl-D-aspartate re...    31   7.8  

>U58682-1|AAB07066.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 6e-17
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 117 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 269
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>L05091-1|AAC15855.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 6e-17
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 117 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 269
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>CR457055-1|CAG33336.1|   69|Homo sapiens RPS28 protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 6e-17
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 117 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 269
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC070218-1|AAH70218.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 6e-17
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 117 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 269
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC070217-1|AAH70217.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 6e-17
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 117 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 269
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC021239-1|AAH21239.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 6e-17
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 117 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 269
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC000354-1|AAH00354.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 6e-17
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 117 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 269
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>AB061846-1|BAB79484.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 6e-17
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +3

Query: 117 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 269
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>AL023513-1|CAI19979.1|   57|Homo sapiens protein ( Human DNA
           sequence from clone RP1-268D13 on chromosome
           22q11.21-12.2.  ).
          Length = 57

 Score = 42.7 bits (96), Expect = 0.002
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +3

Query: 120 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 230
           P  L +  KVLGRT SQGQCT+V VEF+   S+++ R
Sbjct: 8   PVKLVKATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44


>AB209695-1|BAD92932.1| 1491|Homo sapiens N-methyl-D-aspartate
            receptor subunit 2A precursor variant protein.
          Length = 1491

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 24/73 (32%), Positives = 31/73 (42%)
 Frame = +2

Query: 56   RQLWCTCVNCIKLDITSQNG*TQRSCSCRESTRPYWFSGPVYSSEGRVHWGDQPSDHQER 235
            RQLW   V+ I+ D  SQN  +QR  +  E+ R +    P Y  E   H     SD  E 
Sbjct: 1038 RQLWKKSVDSIRQDSLSQNPVSQRDEATAEN-RTHSLKSPRYLPEEMAH-----SDFSET 1091

Query: 236  ERTGP*RRHPHSS 274
                   R P +S
Sbjct: 1092 SNRATCHREPDNS 1104


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,244,499
Number of Sequences: 237096
Number of extensions: 1181246
Number of successful extensions: 2067
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2067
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12047931574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)