Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_C06
(991 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce... 81 2e-16
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 42 1e-04
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 36 0.009
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 34 0.027
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.11
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.19
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.25
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.33
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.44
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 1.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 3.7
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 7.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 7.1
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 9.4
>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 83
Score = 81.0 bits (191), Expect = 2e-16
Identities = 32/43 (74%), Positives = 38/43 (88%)
Frame = +1
Query: 211 CYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCSFRRK 339
C+ ITTVFSHAQ VV+C C+++LCQPTGG+ARL EGCSFRRK
Sbjct: 40 CFNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82
Score = 62.5 bits (145), Expect = 9e-11
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = +3
Query: 93 MPLAIDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPG 209
M LA+DLL+PS SE RKHKLK+LV P S+FMDVKCPG
Sbjct: 1 MVLAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPG 39
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 42.3 bits (95), Expect = 1e-04
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = +1
Query: 697 PPPPPXXPLXPPXXXXXLAXXVXXFXXXXPPPPPPPXXXXXXXXPPPXPP 846
PPPPP + P + PPPPPPP PPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/50 (36%), Positives = 19/50 (38%)
Frame = +1
Query: 697 PPPPPXXPLXPPXXXXXLAXXVXXFXXXXPPPPPPPXXXXXXXXPPPXPP 846
PPPPP + P PPPPPPP PPP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 31.9 bits (69), Expect = 0.14
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +1
Query: 787 PPPPPPXXXXXXXXPPPXPPRHXXPPXSXXXSXPXPPSXLXXAPXXXXP 933
PPPPPP P P P P P PP P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.1 bits (57), Expect = 4.1
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = +1
Query: 790 PPPPPXXXXXXXXPPPXPPRHXXPPXSXXXSXPXPPSXLXXAPXXXXPXXXXSXPAPXA 966
PPPPP P P P PP + P PP P PA A
Sbjct: 732 PPPPPP---AVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSA 787
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 35.9 bits (79), Expect = 0.009
Identities = 23/68 (33%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Frame = -1
Query: 799 GGXGGGXGXGXXXXXXXGGXXXXGGRGGXXGGVGXXRPXXPXXEXXPGAXXGA-XXXGXG 623
GG GGG G GG GG G GG G E PG G G G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Query: 622 XGXRSGXP 599
G G P
Sbjct: 251 LGGFGGGP 258
Score = 30.3 bits (65), Expect = 0.44
Identities = 23/72 (31%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Frame = -1
Query: 802 GGGXGG---GXGXGXXXXXXXGGXXXXGGRGGXXGGVGXXRPXXPXXEXXPGAXXGA-XX 635
GGG GG G G G GG GG GG G PG G
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Query: 634 XGXGXGXRSGXP 599
G G G G P
Sbjct: 254 FGGGPGGFGGGP 265
Score = 26.6 bits (56), Expect = 5.4
Identities = 20/67 (29%), Positives = 20/67 (29%)
Frame = -3
Query: 986 GRGXXRXAXGAGXEXXXXGXXXXGAXXRXEGGXGXEXXXEXGGXXWRGGXGGGXXLXXXK 807
G G G G G G GG G GG GG GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Query: 806 XGGGGGG 786
GGG GG
Sbjct: 254 FGGGPGG 260
Score = 26.2 bits (55), Expect = 7.1
Identities = 22/70 (31%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Frame = -3
Query: 986 GRGXXRXAXGAGXEXXXXGXXXX--GAXXRXEGGXGXEXXXEXGGXXWRGGXGGGXXLXX 813
G G G G E G G EGG G G GG GGG
Sbjct: 203 GPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFG 262
Query: 812 XKXGGGGGGG 783
GG GG G
Sbjct: 263 GGPGGHGGPG 272
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 34.3 bits (75), Expect = 0.027
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 784 PPPPPPPXXXXXXXXPPPXPP 846
PPPPPPP PPP PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 34.3 bits (75), Expect = 0.027
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 784 PPPPPPPXXXXXXXXPPPXPP 846
PPPPPPP PPP PP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 863 PXPXPPXPPXPPPXSPP 913
P P PP P PP PP
Sbjct: 9 PPPPPPPPGFEPPSQPP 25
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +2
Query: 863 PXPXPPXPPXPPPXSPP 913
P PP PP PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPP 21
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.11
Identities = 25/94 (26%), Positives = 25/94 (26%)
Frame = +1
Query: 691 GXPPPPPXXPLXPPXXXXXLAXXVXXFXXXXPPPPPPPXXXXXXXXPPPXPPRHXXPPXS 870
G PP P PP A V PP P P PP P PP
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI-----PPVPKPAAGVPPVP 1192
Query: 871 XXXSXPXPPSXLXXAPXXXXPXXXXSXPAPXAXL 972
P P P P P P A L
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGL 1226
Score = 28.3 bits (60), Expect = 1.8
Identities = 23/86 (26%), Positives = 24/86 (27%), Gaps = 5/86 (5%)
Frame = +1
Query: 691 GXPPPPPXXPLXPPXXXXXLAXX-VXXFXXXXPPPPPP----PXXXXXXXXPPPXPPRHX 855
G PP P PP V PP PPP P PP PP
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTA 1216
Query: 856 XPPXSXXXSXPXPPSXLXXAPXXXXP 933
P + P P AP P
Sbjct: 1217 PPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 27.9 bits (59), Expect = 2.3
Identities = 25/104 (24%), Positives = 31/104 (29%), Gaps = 5/104 (4%)
Frame = +1
Query: 691 GXPPPPPXXPLXPPXXXXXLAXXVXXFXXXXPPPPPP---PXXXXXXXXPPPXP-PRHXX 858
G PP P + P A V PP P P P PP P P
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140
Query: 859 PPXSXXXSXPXPPSXLXXAPXXXXPXXXXSXPAPXAXL-XXPRP 987
P + P P+ P PAP + + P+P
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184
Score = 27.9 bits (59), Expect = 2.3
Identities = 26/103 (25%), Positives = 27/103 (26%), Gaps = 4/103 (3%)
Frame = +1
Query: 691 GXPPPPPXXPLXPPXXXXXLAXXVXXFXXXXPPPP----PPPXXXXXXXXPPPXPPRHXX 858
G PP P PP A V PP P PP PP P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178
Query: 859 PPXSXXXSXPXPPSXLXXAPXXXXPXXXXSXPAPXAXLXXPRP 987
PP + P AP P P P P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGV-PPVPPPSTAPPVP 1220
Score = 27.5 bits (58), Expect = 3.1
Identities = 22/93 (23%), Positives = 23/93 (24%)
Frame = +1
Query: 682 SXXGXPPPPPXXPLXPPXXXXXLAXXVXXFXXXXPPPPPPPXXXXXXXXPPPXPPRHXXP 861
S G P PP P+ P P PP PP P P
Sbjct: 1055 SSSGAPSAPP--PVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112
Query: 862 PXSXXXSXPXPPSXLXXAPXXXXPXXXXSXPAP 960
P P P AP P P P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +2
Query: 785 PPXPPPPXXPPXXXXXXXXXXATRXXPXPXPPXPPXPPPXSPP 913
PP P P PP A P P P P P P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP 1083
Score = 26.2 bits (55), Expect = 7.1
Identities = 21/96 (21%), Positives = 24/96 (25%)
Frame = +1
Query: 700 PPPPXXPLXPPXXXXXLAXXVXXFXXXXPPPPPPPXXXXXXXXPPPXPPRHXXPPXSXXX 879
PP P PP V P PPP P P P +
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPK-SSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSG 1090
Query: 880 SXPXPPSXLXXAPXXXXPXXXXSXPAPXAXLXXPRP 987
P P + P PAP P+P
Sbjct: 1091 IPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.19
Identities = 19/50 (38%), Positives = 19/50 (38%)
Frame = +1
Query: 784 PPPPPPPXXXXXXXXPPPXPPRHXXPPXSXXXSXPXPPSXLXXAPXXXXP 933
P PPPPP PP PP PP S P PP AP P
Sbjct: 1705 PTPPPPPMSVPP---PPSAPPMPAGPP-----SAPPPPLPASSAPSVPNP 1746
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +2
Query: 785 PPXPPPPXXPPXXXXXXXXXXATRXXPXPXPPXPPXPPPXSPP 913
PP P PP P P P P PP +PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.1 bits (67), Expect = 0.25
Identities = 24/67 (35%), Positives = 25/67 (37%)
Frame = -3
Query: 896 GGXGXEXXXEXGGXXWRGGXGGGXXLXXXKXGGGGGGGXXXXKXXTXXARXXXXXGGXRG 717
GG G G RGG GGG GGG GG + AR GG G
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGG----RGGARGGGRGGARGGRGGRGGAR-----GGRGG 59
Query: 716 XXGGGGG 696
GG GG
Sbjct: 60 SSGGRGG 66
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -1
Query: 802 GGGXGGGXGXGXXXXXXXGGXXXX-GGRGGXXGG 704
GGG GG G GG GGRGG GG
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 26.2 bits (55), Expect = 7.1
Identities = 20/67 (29%), Positives = 22/67 (32%)
Frame = -3
Query: 896 GGXGXEXXXEXGGXXWRGGXGGGXXLXXXKXGGGGGGGXXXXKXXTXXARXXXXXGGXRG 717
G G G + GG GG GGG GG + R GG RG
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGG--------FGGGRGGARGGGRGGARGGR--GGRGGARG 55
Query: 716 XXGGGGG 696
GG G
Sbjct: 56 GRGGSSG 62
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.33
Identities = 17/52 (32%), Positives = 19/52 (36%)
Frame = +1
Query: 682 SXXGXPPPPPXXPLXPPXXXXXLAXXVXXFXXXXPPPPPPPXXXXXXXXPPP 837
S PPPPP PP + + PPPPPP PPP
Sbjct: 332 SNSSLPPPPP-----PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 30.7 bits (66), Expect = 0.33
Identities = 19/76 (25%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Frame = +1
Query: 697 PP--PPPXXPLXPPXXXXXLAXXVXXFXXXXPPPPPPPXXXXXXXXPPPXPPRHXXPPXS 870
PP PP P PP L P P P PP PP PP +
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479
Query: 871 XXXSXPXPPSXLXXAP 918
+ P + + P
Sbjct: 480 PAPAPAAPVASIAELP 495
Score = 30.3 bits (65), Expect = 0.44
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = +1
Query: 700 PPPPXXPLXPPXXXXXLAXXVXXFXXXXPPPPPPPXXXXXXXXPPPXPPRHXXPP 864
PPPP P + PPPPPPP P P R PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSN--SSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = +1
Query: 691 GXPPPPPXXPLXPPXXXXXLAXXVXXFXXXXPPPPPPPXXXXXXXXPPPXPPRHXXP 861
G P P+ P V PPP PPP PP PPR P
Sbjct: 222 GTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSS-PPNSPPRPIAP 277
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/50 (32%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Frame = +2
Query: 785 PPXPPP-------PXXPPXXXXXXXXXXATRXXPXPXPPXPPXPPPXSPP 913
PP PPP P PP P P PP PP +PP
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/41 (29%), Positives = 15/41 (36%)
Frame = +2
Query: 788 PXPPPPXXPPXXXXXXXXXXATRXXPXPXPPXPPXPPPXSP 910
P PPPP P ++R P P P P +P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +1
Query: 787 PPPPPPXXXXXXXXPPPXPPRHXXPPXSXXXSXP 888
PPPPPP P P PP S P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.44
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = +1
Query: 784 PPPPPPPXXXXXXXXPPPXPPRHXXPPXSXXXSXPXPPSXLXXAPXXXXPXXXXSXP 954
P P PP P PPR PP S S P PS P P + P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPS-PASAPPIPSKAPPIPSSLPPPAQPAAP 180
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/58 (25%), Positives = 18/58 (31%)
Frame = +1
Query: 697 PPPPPXXPLXPPXXXXXLAXXVXXFXXXXPPPPPPPXXXXXXXXPPPXPPRHXXPPXS 870
PPP P P + + P PP PP PP+ PP S
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLS 207
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Frame = +2
Query: 785 PPXPPPPXXPPXXXXXXXXXXATR-------XXPXPXPPXPPXPPPXSP 910
PP PPPP PP +R P PP P PP P
Sbjct: 238 PPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPP 286
Score = 26.6 bits (56), Expect = 5.4
Identities = 21/76 (27%), Positives = 21/76 (27%), Gaps = 3/76 (3%)
Frame = +1
Query: 682 SXXGXPPPPPXXPLXPPXXXXXLAXXVXXFXXXXPPPPPPPXXXXXXXXP---PPXPPRH 852
S PPPPP P P PP P PP PP
Sbjct: 185 SDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPP 244
Query: 853 XXPPXSXXXSXPXPPS 900
PP S S PS
Sbjct: 245 TLPPQSTNTSQLPMPS 260
Score = 26.6 bits (56), Expect = 5.4
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 869 PXPPXPPXPPPXSPP 913
P P PP PPP PP
Sbjct: 234 PLPAPPPPPPPTLPP 248
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 794 PPPPXXPPXXXXXXXXXXATRXXPXPXPPXPPXPPP 901
PPP PP AT PP PP PPP
Sbjct: 167 PPPSFQPPSAAAP-----ATSLPSDYNPPPPPPPPP 197
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 24.6 bits (51), Expect(2) = 1.5
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = +1
Query: 784 PPPPPPPXXXXXXXXPPPXP 843
PPPPPPP P P
Sbjct: 308 PPPPPPPSNDFWKDSNEPAP 327
Score = 22.2 bits (45), Expect(2) = 1.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 691 GXPPPPPXXP 720
G PPPPP P
Sbjct: 304 GLPPPPPPPP 313
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 9.4
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Frame = +1
Query: 697 PPPPPXXPLXP-------PXXXXXLAXX--VXXFXXXXPPPPPPP 804
PPPPP P+ P +A V PPPPPPP
Sbjct: 907 PPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPP 951
Score = 23.0 bits (47), Expect(2) = 3.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 875 PPXPPXPPP 901
PP PP PPP
Sbjct: 945 PPPPPPPPP 953
Score = 22.2 bits (45), Expect(2) = 3.7
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 785 PPXPPPPXXPP 817
P PPPP PP
Sbjct: 942 PAFPPPPPPPP 952
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -1
Query: 802 GGGXGGGXGXGXXXXXXXGGXXXXGGRGGXXGGVGXXRP 686
GGG GG G G GGRG GG P
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNP 484
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 790 PPPPPXXXXXXXXPPPXPPRHXXPP 864
PPPPP PP P PP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPP 1906
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 9.4
Identities = 20/69 (28%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Frame = +1
Query: 700 PPPPXXPLXP--PXXXXXLAXXVXXFXXXXPPPPPPPXXXXXXXXPPPXPPRHXXPPXSX 873
P PP P+ P P A V P PP P P P R P
Sbjct: 605 PQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEV----PSVPQRPAVPVVPE 660
Query: 874 XXSXPXPPS 900
S P PP+
Sbjct: 661 APSVPQPPA 669
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,546
Number of Sequences: 5004
Number of extensions: 52756
Number of successful extensions: 486
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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