BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_C06
(991 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different... 34 0.008
AY957503-1|AAY41942.1| 596|Anopheles gambiae vasa-like protein ... 31 0.070
AY785361-1|AAV52865.1| 960|Anopheles gambiae male-specific tran... 30 0.12
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren... 26 0.14
AY785360-1|AAV52864.1| 759|Anopheles gambiae male-specific tran... 29 0.28
DQ655702-1|ABG45862.1| 889|Anopheles gambiae Jxc1 protein. 28 0.38
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T... 23 1.0
AY344830-1|AAR05801.1| 334|Anopheles gambiae ICHIT protein. 26 1.5
AY578797-1|AAT07302.1| 304|Anopheles gambiae activin protein. 25 3.5
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta... 25 3.5
AJ438610-4|CAD27476.1| 593|Anopheles gambiae putative transcrip... 21 4.0
AY301275-1|AAQ67361.1| 611|Anopheles gambiae G-protein coupled ... 25 4.6
AJ439353-2|CAD27924.1| 612|Anopheles gambiae putative G-protein... 25 4.6
AJ438610-1|CAD27473.1| 838|Anopheles gambiae putative microtubu... 25 4.6
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote... 24 6.1
AY725820-1|AAU50568.1| 593|Anopheles gambiae fruitless female-s... 24 8.1
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein. 24 8.1
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T... 24 8.1
>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
differentiation regulator protein.
Length = 1283
Score = 33.9 bits (74), Expect = 0.008
Identities = 20/55 (36%), Positives = 21/55 (38%)
Frame = -3
Query: 863 GGXXWRGGXGGGXXLXXXKXGGGGGGGXXXXKXXTXXARXXXXXGGXRGXXGGGG 699
GG G GGG GGGGGG + R GG G GGGG
Sbjct: 204 GGGSGGGAPGGGGGSSGGPGPGGGGGGGGRDRDHRD--RDREREGGGNGGGGGGG 256
Score = 32.3 bits (70), Expect = 0.023
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = -2
Query: 912 GGEXGGGXGGXGGXGXGXXRVAXXXXXXXXXXGGXXGGGGXGG 784
GG GG G GG G G R GG GGGG GG
Sbjct: 216 GGSSGGPGPGGGGGGGGRDR--DHRDRDREREGGGNGGGGGGG 256
Score = 29.9 bits (64), Expect = 0.12
Identities = 27/114 (23%), Positives = 28/114 (24%)
Frame = -1
Query: 970 GGXGVXXXXRXAXXXGAXXRXXXGRGXGGXRXXXXGXXXXGXXGXXXXXXXXXXXXGGGX 791
GG G A + R G G GG G G G
Sbjct: 145 GGSGAIHASPNAQNPSSGGRSSSGGGGGGGGGGGAGSFAAALRNLAKQADVKEDEPGAGG 204
Query: 790 GGGXGXGXXXXXXXGGXXXXGGRGGXXGGVGXXRPXXPXXEXXPGAXXGAXXXG 629
GG G GG G GG GG G R G G G
Sbjct: 205 GGSGGGA---PGGGGGSSGGPGPGGGGGGGGRDRDHRDRDREREGGGNGGGGGG 255
Score = 29.1 bits (62), Expect = 0.21
Identities = 16/43 (37%), Positives = 17/43 (39%)
Frame = -2
Query: 912 GGEXGGGXGGXGGXGXGXXRVAXXXXXXXXXXGGXXGGGGXGG 784
GG GGG GG G +A G GGGG GG
Sbjct: 169 GGGGGGGGGGAGSFAAALRNLAKQADVKEDEPGA--GGGGSGG 209
Score = 24.6 bits (51), Expect = 4.6
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = -3
Query: 863 GGXXWRGGXGGGXXLXXXKXGGGGGGGXXXXKXXTXXARXXXXXGGXRGXXGGGGG 696
GG GG GGG GGGGG A+ G GGG G
Sbjct: 162 GGRSSSGGGGGG---------GGGGGAGSFAAALRNLAKQADVKEDEPGAGGGGSG 208
>AY957503-1|AAY41942.1| 596|Anopheles gambiae vasa-like protein
protein.
Length = 596
Score = 30.7 bits (66), Expect = 0.070
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 896 GGXGXEXXXEXGGXXWRGGXGGGXXLXXXKXGGGGGGG 783
G G + GG RGG GGG + G GGGG
Sbjct: 56 GYGGGDDGYGGGGRGGRGGRGGGRGRGRGRGGRDGGGG 93
Score = 27.1 bits (57), Expect = 0.87
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = -3
Query: 845 GGXGGGXXLXXXKXGGGGGGGXXXXKXXTXXARXXXXXGGXRGXXGGGGG 696
GG GGG GGGG GG R G G GGG G
Sbjct: 55 GGYGGGDD----GYGGGGRGGRGGRGGGRGRGRGRGGRDGGGGFGGGGYG 100
>AY785361-1|AAV52865.1| 960|Anopheles gambiae male-specific
transcription factor FRU-MA protein.
Length = 960
Score = 29.9 bits (64), Expect = 0.12
Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Frame = -3
Query: 863 GGXXWRGGXGGGXXLXXXKX---GGGGGGGXXXXKXXTXXARXXXXXGGXRGXXGGGG 699
GG G GGG + G GGGG + + A GG G GGG
Sbjct: 815 GGGGGAGASGGGFLITGDPSDTIGAGGGGAGGPLRGSSGGAGGGSSGGGGSGGTSGGG 872
Score = 27.5 bits (58), Expect = 0.66
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -2
Query: 912 GGEXGGGXGGXGGXGXGXXRVAXXXXXXXXXXGGXXGGGGXG 787
GG GGG G G G V GG GGG G
Sbjct: 535 GGMAGGGSDGPEYEGAGRGGVGSGIGGGGGGGGGGRAGGGVG 576
Score = 27.1 bits (57), Expect = 0.87
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Frame = -3
Query: 845 GGXGGGXXLXXXKXGGGGG--GGXXXXKXXTXXARXXXXXGGXRGXXGGGGG 696
GG GG + + G GG GG R G G GGGGG
Sbjct: 518 GGGGGSGCVNGSRTVGAGGMAGGGSDGPEYEGAGRGGVGSGIGGGGGGGGGG 569
Score = 25.8 bits (54), Expect = 2.0
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = -3
Query: 893 GXGXEXXXEXGGXXWRGGXGGGXXLXXXKXGGGGGGG 783
G G G + G GG GGGGGGG
Sbjct: 533 GAGGMAGGGSDGPEYEGAGRGGVGSGIGGGGGGGGGG 569
Score = 25.4 bits (53), Expect = 2.6
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 802 GGGXGGGXGXGXXXXXXXGGXXXXGGRGGXXGG 704
GGG GG G GG GG GG GG
Sbjct: 840 GGGGAGGPLRG-SSGGAGGGSSGGGGSGGTSGG 871
Score = 24.2 bits (50), Expect = 6.1
Identities = 22/66 (33%), Positives = 23/66 (34%)
Frame = -1
Query: 802 GGGXGGGXGXGXXXXXXXGGXXXXGGRGGXXGGVGXXRPXXPXXEXXPGAXXGAXXXGXG 623
G G GGG G G G GG GG G P GA G+ G G
Sbjct: 813 GNGGGGGAGASGGGFLITGDPSDTIGAGG--GGAG-----GPLRGSSGGAGGGS-SGGGG 864
Query: 622 XGXRSG 605
G SG
Sbjct: 865 SGGTSG 870
Score = 23.8 bits (49), Expect = 8.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 845 GGXGGGXXLXXXKXGGGGGGG 783
GG GGG GGGGGGG
Sbjct: 293 GGVGGGGG----GGGGGGGGG 309
Score = 23.8 bits (49), Expect = 8.1
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -2
Query: 900 GGGXGGXGGXGXGXXRVAXXXXXXXXXXGGXXGGG 796
G G GG GG G A GG GGG
Sbjct: 838 GAGGGGAGGPLRGSSGGAGGGSSGGGGSGGTSGGG 872
>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
methoprene-tolerant protein protein.
Length = 1115
Score = 25.8 bits (54), Expect(2) = 0.14
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +1
Query: 784 PPPPPPPXXXXXXXXPPPXPPRHXXPPXS 870
PPPPPPP P P + P S
Sbjct: 785 PPPPPPPSSLSPGGVPRPTVLQKLDPQLS 813
Score = 24.2 bits (50), Expect(2) = 0.82
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = +1
Query: 784 PPPPPPPXXXXXXXXPPPXP 843
PPPPPPP P P
Sbjct: 783 PPPPPPPPPSSLSPGGVPRP 802
Score = 24.2 bits (50), Expect = 6.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 875 PPXPPXPPPXS 907
PP PP PPP S
Sbjct: 783 PPPPPPPPPSS 793
Score = 22.2 bits (45), Expect(2) = 0.14
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 691 GXPPPPPXXP 720
G PPPPP P
Sbjct: 781 GSPPPPPPPP 790
Score = 21.0 bits (42), Expect(2) = 0.82
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = +1
Query: 664 RSLXXXSXXGXPPPPPXXP 720
RS PPPPP P
Sbjct: 773 RSAFADGIGSPPPPPPPPP 791
>AY785360-1|AAV52864.1| 759|Anopheles gambiae male-specific
transcription factor FRU-MB protein.
Length = 759
Score = 28.7 bits (61), Expect = 0.28
Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Frame = -3
Query: 986 GRGXXRXAXGAGXEXXXXGXXXXGAXXRXEGGXGXEXXXEXGGXXWRGGXGGGXXL--XX 813
G G R + G G G A G G G RGG GG +
Sbjct: 679 GGGSGRSSSGGGM----IGMHSVAAGAAVAAGGGVAGMMSTGAGVNRGGDGGCGSIGGEV 734
Query: 812 XKXGGGGGGG 783
GGGGGGG
Sbjct: 735 GSVGGGGGGG 744
Score = 27.5 bits (58), Expect = 0.66
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 802 GGGXGGGXGXGXXXXXXXGGXXXXGGRGG 716
GGG GGG G G G GG GG
Sbjct: 653 GGGGGGGGGGGGSVGSGGIGSSSLGGGGG 681
Score = 27.5 bits (58), Expect = 0.66
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -1
Query: 802 GGGXGGGXGXGXXXXXXXGGXXXXGGRGGXXGGVG 698
GGG GGG G G G GG G G
Sbjct: 654 GGGGGGGGGGGSVGSGGIGSSSLGGGGGSGRSSSG 688
Score = 27.1 bits (57), Expect = 0.87
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = -2
Query: 912 GGEXGGGXGGXGGXGXGXXRVAXXXXXXXXXXGGXXGGGGXGG 784
G GGG GG GG G + G GGG G
Sbjct: 651 GSGGGGGGGGGGGGSVGSGGIGSSSLGGGGGSGRSSSGGGMIG 693
Score = 25.8 bits (54), Expect = 2.0
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = -3
Query: 803 GGGGGGGXXXXKXXTXXARXXXXXGGXRGXXGGG 702
GGGGGGG + G R GGG
Sbjct: 657 GGGGGGGGSVGSGGIGSSSLGGGGGSGRSSSGGG 690
Score = 25.4 bits (53), Expect = 2.6
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = -1
Query: 802 GGGXGGGXGXGXXXXXXXGGXXXXGGRGGXXGGVG 698
GGG GG G G GG G G +G
Sbjct: 659 GGGGGGSVGSGGIGSSSLGGGGGSGRSSSGGGMIG 693
Score = 24.2 bits (50), Expect = 6.1
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -1
Query: 802 GGGXGGGXGXGXXXXXXXGGXXXXGGRGGXXGG 704
G G GGG G G GG GG G
Sbjct: 651 GSGGGGGGGGGGGGSVGSGGIGSSSLGGGGGSG 683
Score = 24.2 bits (50), Expect = 6.1
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Frame = -3
Query: 803 GGGGGGGXXXXKXXT-XXARXXXXXGGXRGXXGGGGG 696
GGGGGGG + GG G GGG
Sbjct: 654 GGGGGGGGGGGSVGSGGIGSSSLGGGGGSGRSSSGGG 690
Score = 23.8 bits (49), Expect = 8.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 845 GGXGGGXXLXXXKXGGGGGGG 783
GG GGG GGGGGGG
Sbjct: 293 GGVGGGGG----GGGGGGGGG 309
>DQ655702-1|ABG45862.1| 889|Anopheles gambiae Jxc1 protein.
Length = 889
Score = 28.3 bits (60), Expect = 0.38
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 875 PPXPPXPPPXSPP 913
PP PP PPP PP
Sbjct: 582 PPAPPPPPPMGPP 594
Score = 26.6 bits (56), Expect = 1.1
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 784 PPPPPPPXXXXXXXXPPPXPP 846
PPPPPPP P PP
Sbjct: 530 PPPPPPPGGAVLNIPPQFLPP 550
Score = 25.0 bits (52), Expect = 3.5
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 863 PXPXPPXPPXPPPXSP 910
P PP PP PP SP
Sbjct: 582 PPAPPPPPPMGPPPSP 597
Score = 24.6 bits (51), Expect = 4.6
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +3
Query: 768 LPXPXPPPXPPPXFXXXQXXXXXXPXXPXXXXPLXXXLXPPXPLPS 905
LP PPP PPP P P PL PLP+
Sbjct: 576 LPNAQPPPAPPP------PPPMGPPPSPLAGGPLGGPAGSRPPLPN 615
>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
phosphatase protein.
Length = 1977
Score = 23.0 bits (47), Expect(2) = 1.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -3
Query: 836 GGGXXLXXXKXGGGGGGG 783
GG + GGGGGGG
Sbjct: 939 GGNKDVLDGGGGGGGGGG 956
Score = 21.8 bits (44), Expect(2) = 1.0
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = -3
Query: 803 GGGGGGGXXXXKXXTXXAR 747
GGGGGGG T R
Sbjct: 951 GGGGGGGFLHGSNRTVIGR 969
>AY344830-1|AAR05801.1| 334|Anopheles gambiae ICHIT protein.
Length = 334
Score = 26.2 bits (55), Expect = 1.5
Identities = 11/37 (29%), Positives = 12/37 (32%)
Frame = +1
Query: 787 PPPPPPXXXXXXXXPPPXPPRHXXPPXSXXXSXPXPP 897
PPPPP P H P + P PP
Sbjct: 211 PPPPPTTTTTVWIDPTATTTTHVPPTTTTWSDLPPPP 247
>AY578797-1|AAT07302.1| 304|Anopheles gambiae activin protein.
Length = 304
Score = 25.0 bits (52), Expect = 3.5
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -3
Query: 848 RGGXGG-GXXLXXXKXGGGGGGG 783
+GG G G K GGGGGGG
Sbjct: 233 QGGAGNRGLGKMHHKAGGGGGGG 255
>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
TPR-containing phosphoprotein protein.
Length = 1200
Score = 25.0 bits (52), Expect = 3.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 912 GGEXGGGXGGXGGXGXG 862
GGE GGG G G G G
Sbjct: 916 GGEVGGGGGSGGEEGSG 932
>AJ438610-4|CAD27476.1| 593|Anopheles gambiae putative
transcription factor protein.
Length = 593
Score = 21.4 bits (43), Expect(2) = 4.0
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 809 KXGGGGGGG 783
+ GGGGGGG
Sbjct: 12 RAGGGGGGG 20
Score = 21.4 bits (43), Expect(2) = 4.0
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 728 GXRGXXGGGGGXP 690
G G GGGGG P
Sbjct: 14 GGGGGGGGGGGGP 26
>AY301275-1|AAQ67361.1| 611|Anopheles gambiae G-protein coupled
receptor protein.
Length = 611
Score = 24.6 bits (51), Expect = 4.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -1
Query: 802 GGGXGGGXGXGXXXXXXXGGXXXXGG 725
GGG GGG G G GG G
Sbjct: 558 GGGGGGGGGVGGGIGLSLGGAAGVDG 583
Score = 23.8 bits (49), Expect = 8.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 848 RGGXGGGXXLXXXKXGGGGGGG 783
+GG GGG GGGGGGG
Sbjct: 552 KGGGGGGG-------GGGGGGG 566
>AJ439353-2|CAD27924.1| 612|Anopheles gambiae putative G-protein
coupled receptor protein.
Length = 612
Score = 24.6 bits (51), Expect = 4.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -1
Query: 802 GGGXGGGXGXGXXXXXXXGGXXXXGG 725
GGG GGG G G GG G
Sbjct: 559 GGGGGGGGGVGGGIGLSLGGAAGVDG 584
Score = 23.8 bits (49), Expect = 8.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 848 RGGXGGGXXLXXXKXGGGGGGG 783
+GG GGG GGGGGGG
Sbjct: 553 KGGGGGGG-------GGGGGGG 567
>AJ438610-1|CAD27473.1| 838|Anopheles gambiae putative microtubule
binding protein protein.
Length = 838
Score = 24.6 bits (51), Expect = 4.6
Identities = 19/72 (26%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
Frame = +1
Query: 784 PPPPPPPXXXXXXXXPP--PXPPRHXXPPXSXXXSXPXPPSXLXXAPXXXXPXXXXSXP- 954
P P PP PP P P R PP + P A P P
Sbjct: 206 PTQPQPPRPGGMYPQPPGVPMPMRPQMPPGAVPGMQPGMQPRPPSAQGMQRPPMMGQPPP 265
Query: 955 -APXAXLXXPRP 987
P + PRP
Sbjct: 266 IRPPNPMGGPRP 277
>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
protein.
Length = 1645
Score = 24.2 bits (50), Expect = 6.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 848 RGGXGGGXXLXXXKXGGGGGG 786
+GG GG GGGGGG
Sbjct: 1483 QGGYGGSPTKGAGGGGGGGGG 1503
>AY725820-1|AAU50568.1| 593|Anopheles gambiae fruitless
female-specific zinc-fingerC isoform protein.
Length = 593
Score = 23.8 bits (49), Expect = 8.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 845 GGXGGGXXLXXXKXGGGGGGG 783
GG GGG GGGGGGG
Sbjct: 245 GGVGGGGG----GGGGGGGGG 261
>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
Length = 1132
Score = 23.8 bits (49), Expect = 8.1
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = -3
Query: 845 GGXGGGXXLXXXKXGGGGGGGXXXXKXXTXXARXXXXXGGXRGXXGGGGGXP 690
GG GGG GGGGGGG T GGG P
Sbjct: 547 GGGGGG--------GGGGGGGGVIGSGSTTRLPPLHQPFPMLANHAGGGAIP 590
>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
phosphatase protein.
Length = 1978
Score = 23.8 bits (49), Expect = 8.1
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 836 GGGXXLXXXKXGGGGGGGXXXXKXXTXXAR 747
GG + GGGGGGG T R
Sbjct: 938 GGNKDVLDGGGGGGGGGGFLHGSNRTVIGR 967
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 769,436
Number of Sequences: 2352
Number of extensions: 16967
Number of successful extensions: 373
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 108530136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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