Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C06
         (991 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 784  PPPPPPP 804
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 784  PPPPPPP 804
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 869 PXPPXPPXPPPXS 907
           P  P PP PPP S
Sbjct: 338 PPKPAPPPPPPSS 350



 Score = 22.6 bits (46), Expect = 5.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 771 PXPXPPPXPP 800
           P P PPP PP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 785 PPXPPPPXXPP 817
           PP P PP  PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 869 PXPPXPPXPPPXSPP 913
           P P  PP PP  S P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 842 GXGGGXXLXXXKXGGGGGG 786
           G  GG  +     GGGGGG
Sbjct: 33  GASGGSIVVGANNGGGGGG 51



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 10/34 (29%), Positives = 11/34 (32%)
 Frame = -1

Query: 799 GGXGGGXGXGXXXXXXXGGXXXXGGRGGXXGGVG 698
           GG G     G       G        GG  GG+G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 845 GGXGGGXXLXXXKXGGGGGGG 783
           G  GG   +     GGGGG G
Sbjct: 33  GASGGSIVVGANNGGGGGGLG 53


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 848  ATRXXPXPXPPXPPXPPP 901
            + R  P    P PP PPP
Sbjct: 1847 SARNIPVSGSPEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 131 RRGRMQQINCERHGYKPL 78
           RRG    + CE  G KP+
Sbjct: 789 RRGEPAVLQCEAQGEKPI 806


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 863 PXPXPPXPPXPPPXSPP 913
           P P    PP  PP +PP
Sbjct: 40  PNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = -1

Query: 607 GXPPRPXXGXXXXXPPXRP 551
           G PP P  G     PP  P
Sbjct: 37  GSPPNPSQGPPPGGPPGAP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,603
Number of Sequences: 438
Number of extensions: 8656
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32774469
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)