Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C05
         (964 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434     34   0.19 
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016     30   3.2  
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594           26   6.2  
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111...    29   7.3  
02_02_0272 - 8452994-8453187,8453850-8454975                           29   7.3  
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    28   9.6  

>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
          Length = 418

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -3

Query: 386 GXRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMAL 270
           G   P R+SP    L+   PAEAALS  RSL S  P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176


>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
          Length = 360

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 286 ADFNDRHKLSAASAGLALDNVNGHGLSLTGTRIPGFGEQLGVAGXVXL 429
           A  N+R + S AS  +A  + + HG+ + G   P +G     AG + L
Sbjct: 173 AGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSL 220


>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
          Length = 622

 Score = 26.2 bits (55), Expect(2) = 6.2
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 464 RSRSGTRPAPIPNAPNFNTLGRRSGL-HVPTEGGXXVXP 577
           RS+   RP P PN P   T  R   L  VP  GG  V P
Sbjct: 36  RSQPSPRPLPHPNTP---TRPRAPSLVRVPRRGGEAVVP 71



 Score = 21.0 bits (42), Expect(2) = 6.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 668 TPGFRSLIRLFXDLXGSPCG 727
           +PGFRS+  +   L  SP G
Sbjct: 75  SPGFRSVQPVSVSLPASPSG 94


>03_01_0141 +
           1116833-1117082,1117658-1118574,1119417-1119579,
           1119668-1120497,1120562-1120570
          Length = 722

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 414 CDAELLPEXGNXGPGQAQPV 355
           C A LLPE GN G GQ+  V
Sbjct: 486 CSATLLPEEGNTGDGQSPKV 505


>02_02_0272 - 8452994-8453187,8453850-8454975
          Length = 439

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -3

Query: 371 VRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRG 240
           +RL P P +L RA+   A  + WR L +ADP  L  F +   RG
Sbjct: 20  LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60


>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 374 PVRLSPCPFTLSRASPAEAA 315
           P+RLSP P ++SR  P+ AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,759,931
Number of Sequences: 37544
Number of extensions: 381723
Number of successful extensions: 1048
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)