Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C05
         (964 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34870.1 68415.m04281 hydroxyproline-rich glycoprotein family...    29   3.5  
At5g64360.3 68418.m08085 DNAJ heat shock N-terminal domain-conta...    28   8.0  
At5g64360.2 68418.m08084 DNAJ heat shock N-terminal domain-conta...    28   8.0  
At5g64360.1 68418.m08083 DNAJ heat shock N-terminal domain-conta...    28   8.0  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    28   8.0  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    28   8.0  

>At2g34870.1 68415.m04281 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 116

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 804 FXFPFPXXLPIPXXNXXPXXTFPP 875
           F FPFP   P P     P  TFPP
Sbjct: 84  FPFPFPTSPPAPSLPGFPGFTFPP 107


>At5g64360.3 68418.m08085 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 290 SADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACLRARVGTCLP 153
           SADPMA S + + P        P+   E T+K   C RA     +P
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQAVTIP 232


>At5g64360.2 68418.m08084 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 464

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 290 SADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACLRARVGTCLP 153
           SADPMA S + + P        P+   E T+K   C RA     +P
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQAVTIP 232


>At5g64360.1 68418.m08083 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226 DnaJ domain
          Length = 422

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 290 SADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACLRARVGTCLP 153
           SADPMA S + + P        P+   E T+K   C RA     +P
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQAVTIP 232


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 22/77 (28%), Positives = 27/77 (35%)
 Frame = +1

Query: 730 PPSRNPPQXXXHPSXHTSXPTP*XXLXSPFPXXFQFRXLTXXPXXPFXXXGAPPNXNPXX 909
           PP    P    HPS  +  PTP     +P P        T  P  P    G+PP+ +P  
Sbjct: 61  PPYDPSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSH---TPTPHTPPCNCGSPPS-HPST 116

Query: 910 XXXXXXXXXXHPSXPXS 960
                      PS P S
Sbjct: 117 PSHPSTPSHPTPSHPPS 133


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 22/77 (28%), Positives = 27/77 (35%)
 Frame = +1

Query: 730 PPSRNPPQXXXHPSXHTSXPTP*XXLXSPFPXXFQFRXLTXXPXXPFXXXGAPPNXNPXX 909
           PP    P    HPS  +  PTP     +P P        T  P  P    G+PP+ +P  
Sbjct: 61  PPYDPSPSTPSHPSPPSHTPTPSTPSHTPTPHTPSH---TPTPHTPPCNCGSPPS-HPST 116

Query: 910 XXXXXXXXXXHPSXPXS 960
                      PS P S
Sbjct: 117 PSHPSTPSHPTPSHPPS 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,931,232
Number of Sequences: 28952
Number of extensions: 248617
Number of successful extensions: 564
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2324382072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)