Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_C04
(998 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 298 5e-81
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 296 2e-80
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 295 4e-80
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 1.4
12_01_0981 + 9931542-9931606,9931779-9933105 29 4.4
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 5.8
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 7.7
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 7.7
01_05_0455 + 22387512-22387629,22388344-22388852 29 7.7
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 298 bits (731), Expect = 5e-81
Identities = 136/196 (69%), Positives = 159/196 (81%)
Frame = +3
Query: 75 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 254
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 255 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 434
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137
Query: 435 KLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLITVNDSIQLDXATTKIMDFIKFESGNLC 614
KLCKV+ V G K +P+L T+DGRTIRYPDPLI ND+I++D T KI+DFIKF+ GN+
Sbjct: 138 KLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIV 197
Query: 615 MITGGRNLGRVGTIVS 662
M+TGGRN GRVG I S
Sbjct: 198 MVTGGRNTGRVGVIKS 213
Score = 31.1 bits (67), Expect = 1.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 638 GACGHHRVRERHPGSFDIVHIKDSTG 715
G G + RE+H GSF+ +H++D+ G
Sbjct: 206 GRVGVIKSREKHKGSFETIHVEDALG 231
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 296 bits (726), Expect = 2e-80
Identities = 133/195 (68%), Positives = 159/195 (81%)
Frame = +3
Query: 72 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 252 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 431
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 432 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLITVNDSIQLDXATTKIMDFIKFESGNL 611
+KLCKV+ V G K +PYL T+DGRTIRYPDPLI ND+I++D T KI+DFIKF+ GN+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNV 180
Query: 612 CMITGGRNLGRVGTI 656
M+TGGRN GRVG I
Sbjct: 181 VMVTGGRNTGRVGVI 195
Score = 30.7 bits (66), Expect = 1.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 638 GACGHHRVRERHPGSFDIVHIKDSTG 715
G G + RE+H GSF+ +H++D+ G
Sbjct: 190 GRVGVIKNREKHKGSFETIHVEDALG 215
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 295 bits (724), Expect = 4e-80
Identities = 132/195 (67%), Positives = 159/195 (81%)
Frame = +3
Query: 72 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 252 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 431
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 432 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLITVNDSIQLDXATTKIMDFIKFESGNL 611
+KLCKV+ V G K +PYL T+DGRTIRYPDP+I ND+I++D T KI+DFIKF+ GN+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNV 180
Query: 612 CMITGGRNLGRVGTI 656
M+TGGRN GRVG I
Sbjct: 181 VMVTGGRNTGRVGVI 195
Score = 30.7 bits (66), Expect = 1.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 638 GACGHHRVRERHPGSFDIVHIKDSTG 715
G G + RE+H GSF+ +H++D+ G
Sbjct: 190 GRVGVIKNREKHKGSFETIHVEDALG 215
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 216 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 115
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 29.5 bits (63), Expect = 4.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 503 PHHPLPRPTYHSQRFHPVRHXNY 571
P+H P YH + FHP H Y
Sbjct: 143 PYHQPYNPYYHQEPFHPPHHHQY 165
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 5.8
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 229 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 101
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 7.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 188 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 75
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 7.7
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 113 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 277
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>01_05_0455 + 22387512-22387629,22388344-22388852
Length = 208
Score = 28.7 bits (61), Expect = 7.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 705 SLMCTMSKEPGCLSRTRWCPHAPSYGLP 622
SL + EP CL W PH PS LP
Sbjct: 100 SLGLNLRLEPDCLPSYLWWPHHPSTQLP 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,404,453
Number of Sequences: 37544
Number of extensions: 595860
Number of successful extensions: 1658
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2928685000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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