Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C04
         (998 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             328   3e-90
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.8  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   7.8  
SB_35838| Best HMM Match : NCD3G (HMM E-Value=0.032)                   29   7.8  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  328 bits (807), Expect = 3e-90
 Identities = 147/195 (75%), Positives = 170/195 (87%)
 Frame = +3

Query: 72   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
            MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425  MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484

Query: 252  VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 431
            V KIVKQRLIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAK
Sbjct: 485  VKKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAK 544

Query: 432  YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLITVNDSIQLDXATTKIMDFIKFESGNL 611
            YKL +V+RV  G K VPY+VTHD RTIRYPDP I VND++ +D  T K++D+IKF++GN+
Sbjct: 545  YKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNM 604

Query: 612  CMITGGRNLGRVGTI 656
             M+ GGRN+GRVG +
Sbjct: 605  AMVVGGRNMGRVGMV 619



 Score = 38.7 bits (86), Expect = 0.007
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +2

Query: 635 LGACGHHRVRERHPGSFDIVHIKDSTG 715
           +G  G    RE+H GSFDIVH+KD+TG
Sbjct: 613 MGRVGMVTHREKHAGSFDIVHVKDATG 639


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +3

Query: 228 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 395
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +2

Query: 215 EES--SEVCFDRKRSPENCE 268
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_35838| Best HMM Match : NCD3G (HMM E-Value=0.032)
          Length = 589

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 732 WWRXXVPVESLMCTMSKEPGCLSRTRW 652
           WWR   P     C    E GC SR  W
Sbjct: 279 WWRNLPPNMKASCFSLSERGCASRQGW 305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,011,218
Number of Sequences: 59808
Number of extensions: 638724
Number of successful extensions: 1468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2979300250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)