Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C04
         (998 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...   352   5e-97
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...   352   5e-97
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...   352   5e-97
D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...   346   3e-95
BT021421-1|AAX33569.1| 1098|Drosophila melanogaster LD02690p pro...    30   5.7  
AY051840-1|AAK93264.1|  561|Drosophila melanogaster LD34444p pro...    30   5.7  
AE013599-2039|AAF58149.3| 1098|Drosophila melanogaster CG8155-PA...    30   5.7  

>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score =  352 bits (865), Expect = 5e-97
 Identities = 163/227 (71%), Positives = 187/227 (82%)
 Frame = +3

Query: 72  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 252 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 431
           V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAK
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120

Query: 432 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLITVNDSIQLDXATTKIMDFIKFESGNL 611
           YKLCKVK+   G K VP+LVTHDGRTIRYPDPLI  NDS+Q+D A+ KI D+IKF+SGNL
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNL 180

Query: 612 CMITGGRNLGRVGTIVSARDIPAPSTLCTSRTPRXXTXATXLXHLXL 752
           CMITGGRNLGRVGT+V+    P    +   +  +    AT L ++ +
Sbjct: 181 CMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFI 227


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score =  352 bits (865), Expect = 5e-97
 Identities = 163/227 (71%), Positives = 187/227 (82%)
 Frame = +3

Query: 72  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 252 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 431
           V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAK
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120

Query: 432 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLITVNDSIQLDXATTKIMDFIKFESGNL 611
           YKLCKVK+   G K VP+LVTHDGRTIRYPDPLI  NDS+Q+D A+ KI D+IKF+SGNL
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNL 180

Query: 612 CMITGGRNLGRVGTIVSARDIPAPSTLCTSRTPRXXTXATXLXHLXL 752
           CMITGGRNLGRVGT+V+    P    +   +  +    AT L ++ +
Sbjct: 181 CMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFI 227


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score =  352 bits (865), Expect = 5e-97
 Identities = 163/227 (71%), Positives = 187/227 (82%)
 Frame = +3

Query: 72  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 252 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 431
           V KIV QRL+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAK
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120

Query: 432 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLITVNDSIQLDXATTKIMDFIKFESGNL 611
           YKLCKVK+   G K VP+LVTHDGRTIRYPDPLI  NDS+Q+D A+ KI D+IKF+SGNL
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNL 180

Query: 612 CMITGGRNLGRVGTIVSARDIPAPSTLCTSRTPRXXTXATXLXHLXL 752
           CMITGGRNLGRVGT+V+    P    +   +  +    AT L ++ +
Sbjct: 181 CMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFI 227


>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score =  346 bits (851), Expect = 3e-95
 Identities = 161/227 (70%), Positives = 185/227 (81%)
 Frame = +3

Query: 72  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 251
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+ FLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAE 60

Query: 252 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 431
           V KIV QRL+KV GKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAK
Sbjct: 61  VTKIVMQRLVKVYGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAK 120

Query: 432 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLITVNDSIQLDXATTKIMDFIKFESGNL 611
           YKLCKVK+   G K VP+LVTHDGRTIRYPDPLI  NDS+Q+D A+ KI D+IKF+SGNL
Sbjct: 121 YKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNL 180

Query: 612 CMITGGRNLGRVGTIVSARDIPAPSTLCTSRTPRXXTXATXLXHLXL 752
           CMITGGRNLGRVGT+V+    P    +   +  +    AT L ++ +
Sbjct: 181 CMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFI 227


>BT021421-1|AAX33569.1| 1098|Drosophila melanogaster LD02690p
           protein.
          Length = 1098

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +2

Query: 107 KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 283
           K  QS+D  +    +     NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 555 KVHQSLDESKMLALIEGALDNRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 611


>AY051840-1|AAK93264.1|  561|Drosophila melanogaster LD34444p
           protein.
          Length = 561

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +2

Query: 107 KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 283
           K  QS+D  +    +     NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 18  KVHQSLDESKMLALIEGALDNRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 74


>AE013599-2039|AAF58149.3| 1098|Drosophila melanogaster CG8155-PA
           protein.
          Length = 1098

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +2

Query: 107 KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 283
           K  QS+D  +    +     NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 555 KVHQSLDESKMLALIEGALDNRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 611


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,668,365
Number of Sequences: 53049
Number of extensions: 968156
Number of successful extensions: 2321
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2317
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 5058363141
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)