Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C03
         (939 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   2.0  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   4.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   7.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   7.9  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    22   7.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   7.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 402 SNGLKXAXGLQLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFSTV 253
           +NG+      + V T+++    S  + N+T  A+ S + + Y  +LF  V
Sbjct: 648 TNGIVINRASKRVSTLSIDNVQSTHVGNYTCLASNSASVTTYTTSLFINV 697


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 457 PSKSSTHGDHRNDGQHAPQQWIEXCAWXSTG*HHGSWAC 341
           P+KSST     N      +     C   ++G H+G ++C
Sbjct: 65  PNKSSTSPYPPNHPLSGSKHLCSICGDRASGKHYGVYSC 103


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 575 DAWSDFGWSQLP 610
           D WS F W+ LP
Sbjct: 915 DQWSSFYWNLLP 926


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 575 DAWSDFGWSQLP 610
           D WS F W+ LP
Sbjct: 915 DQWSSFYWNLLP 926


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 159 KTHNIAQFFPIQLLNISVGTHLS 91
           + H +   FPI L  ISV T L+
Sbjct: 386 RQHAVTAKFPIYLYRISVETKLN 408


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 767 ASXXXPPHSAXPPXXLNKKXFFSPP 841
           AS   PPH   PP  + +   +S P
Sbjct: 276 ASLSPPPHVYNPPDHIQQATPYSAP 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,939
Number of Sequences: 336
Number of extensions: 3736
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26375415
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)