Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C03
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   158   9e-40
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   158   9e-40

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  158 bits (384), Expect = 9e-40
 Identities = 77/148 (52%), Positives = 93/148 (62%)
 Frame = +1

Query: 97  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 276
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 277 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKXXRXLQSIAEEXXXXXXXXXXXXSSYW 456
                              TYGKP   GVN LK  R  +  AEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 457 VXQDSSYKYFEVILLDPSHXAIRRDPKI 540
           V QD++YK+FEVIL+DPSH AIRRDP+I
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRI 148



 Score = 33.9 bits (74), Expect = 0.033
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = +3

Query: 540 HWIVNAVXKHREMRGLTS 593
           +WIVN V KHRE RGLTS
Sbjct: 149 NWIVNPVHKHRESRGLTS 166


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  158 bits (384), Expect = 9e-40
 Identities = 77/148 (52%), Positives = 93/148 (62%)
 Frame = +1

Query: 97  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 276
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 277 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKXXRXLQSIAEEXXXXXXXXXXXXSSYW 456
                              TYGKP   GVN LK  R  +  AEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 457 VXQDSSYKYFEVILLDPSHXAIRRDPKI 540
           V QD++YK+FEVIL+DPSH AIRRDP+I
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRI 148



 Score = 33.9 bits (74), Expect = 0.033
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = +3

Query: 540 HWIVNAVXKHREMRGLTS 593
           +WIVN V KHRE RGLTS
Sbjct: 149 NWIVNPVHKHRESRGLTS 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,345
Number of Sequences: 5004
Number of extensions: 56929
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)