Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_C03
(939 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) 178 6e-45
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 34 0.19
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 31 1.3
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4) 29 5.4
>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 178 bits (433), Expect = 6e-45
Identities = 85/148 (57%), Positives = 101/148 (68%)
Frame = +1
Query: 97 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 276
MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFV 60
Query: 277 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKXXRXLQSIAEEXXXXXXXXXXXXSSYW 456
ATYGKP + GVN+LK R L+S+AEE +SYW
Sbjct: 61 IYRVRVRRGGRKRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYW 120
Query: 457 VXQDSSYKYFEVILLDPSHXAIRRDPKI 540
V QDS YKYFEVI++DP H AIRRD +I
Sbjct: 121 VGQDSIYKYFEVIMVDPFHKAIRRDARI 148
Score = 38.7 bits (86), Expect = 0.007
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = +3
Query: 540 HWIVNAVXKHREMRGLTSAXXXXXXXXXXXXXXQTKGGSRRAXWLXRXTL 689
+WI KHRE+RGLT+A + G SRRA W TL
Sbjct: 149 NWICKPTHKHRELRGLTAAGTKNRGMRKGHNYNKVIGSSRRANWKRHNTL 198
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 33.9 bits (74), Expect = 0.19
Identities = 19/61 (31%), Positives = 19/61 (31%)
Frame = +2
Query: 710 PLPKTXPPXXXPXRXXXPXASXXXPPHSAXPPXXLNKKXFFSPPXXPXPXHXPPXPXXXL 889
P P PP P P S PP PP PP P P PP P
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPP 427
Query: 890 P 892
P
Sbjct: 428 P 428
Score = 31.5 bits (68), Expect = 1.0
Identities = 28/120 (23%), Positives = 36/120 (30%), Gaps = 1/120 (0%)
Frame = +2
Query: 581 WSDFGWSQ-LPRSPPGT*ILSNKGRLTPGXLAXTXHSSXRXXR*PLPKTXPPXXXPXRXX 757
WSD+ ++ L GT + + P + + P P PP P
Sbjct: 323 WSDYEKNRILAAKLDGTYMTKVVSVVNPRAIVTDISAGINMSPPPPPPPPPPPPSPPPPP 382
Query: 758 XPXASXXXPPHSAXPPXXLNKKXFFSPPXXPXPXHXPPXPXXXLPXXXRRRXLPSXSXAC 937
P PP PP PP P P PP P P P+ AC
Sbjct: 383 PPPPPSPPPPPQPPPPPPPPP----PPPPPPPPPPPPPPPAPPPPPPPPPPPPPALRLAC 438
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 31.1 bits (67), Expect = 1.3
Identities = 24/95 (25%), Positives = 30/95 (31%)
Frame = +2
Query: 608 PRSPPGT*ILSNKGRLTPGXLAXTXHSSXRXXR*PLPKTXPPXXXPXRXXXPXASXXXPP 787
P PG ++ +++ G T S P P+ P P P PP
Sbjct: 173 PTRLPGNARVNAIDQISIGTSHPTSPSQITQPPPPPPRPPPSPPPPPPPPSPSPPRPPPP 232
Query: 788 HSAXPPXXLNKKXFFSPPXXPXPXHXPPXPXXXLP 892
PP L K PP P PP LP
Sbjct: 233 PPPSPPRPLAAKLPEPPPIPNMPPTLPPPTLGYLP 267
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +2
Query: 710 PLPKTXPPXXXPXRXXXPXASXXXPPHSAXPPXXLNKKXFFSPPXXPXPXHXPP 871
P P PP P P A+ PP A PP PP P P PP
Sbjct: 51 PPPPPSPPAAAPAAPPPPAAAPAAPPPPAAPPAA-------PPPPPPLPAPPPP 97
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.3 bits (65), Expect = 2.4
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = +2
Query: 716 PKTXPPXXXPXRXXXPXASXXXPPHSAXPPXXLNKKXFFSPPXXPXPXHXPP 871
P PP P P PP++ PP + PP P P + PP
Sbjct: 176 PPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPP--NPPYPPPPNAPNPPYPPP 225
Score = 29.5 bits (63), Expect = 4.1
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = +2
Query: 710 PLPKTXPPXXXPXRXXXPXASXXXPPHSAXPPXXLNKKXFFSPPXXPXPXHXPPXPXXXL 889
P P PP P P A PP+ PP N SP P PP P
Sbjct: 103 PPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPP-NAPYPPSPNAPYPPPPNPPYPPPLY 161
Query: 890 P 892
P
Sbjct: 162 P 162
Score = 29.5 bits (63), Expect = 4.1
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +2
Query: 728 PPXXXPXRXXXPXASXXXPPHSA-XPPXXLNKKXFFSPPXXPXPXHXPP 871
PP P P A PP+ PP + PP P P + PP
Sbjct: 188 PPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPYPPPPNAPNPPYPPP 236
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 29.9 bits (64), Expect = 3.1
Identities = 16/54 (29%), Positives = 19/54 (35%)
Frame = +2
Query: 710 PLPKTXPPXXXPXRXXXPXASXXXPPHSAXPPXXLNKKXFFSPPXXPXPXHXPP 871
P P PP P P + PP + PP + K P P P PP
Sbjct: 629 PFPNITPPEVRPSLPGTPPETKTKPPLAPYPP-KTSPKTTPKPHIPPAPSRPPP 681
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.5 bits (63), Expect = 4.1
Identities = 18/61 (29%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Frame = +2
Query: 713 LPKTXPPXXXPXRXXXPXASXXXPPHSAXPPXXLN-KKXFFSPPXXPXPXHXPPXPXXXL 889
LP PP R P PP PP F+ P P P PP P +
Sbjct: 454 LPPNLPPPPGGMRGMPPPPMGMYPPPRGFPPPPFGPPPPFYRGP--PPPRGMPPPPRQRM 511
Query: 890 P 892
P
Sbjct: 512 P 512
>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
Length = 173
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 154 RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 267
+F ++ YR+ T+MH +RP + R G+R KQ
Sbjct: 16 KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,894,244
Number of Sequences: 59808
Number of extensions: 509532
Number of successful extensions: 1503
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2740956230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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