Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C03
         (939 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   168   6e-42
AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical...    29   3.6  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   8.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   8.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   8.4  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  168 bits (408), Expect = 6e-42
 Identities = 75/146 (51%), Positives = 98/146 (67%)
 Frame = +1

Query: 97  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 276
           MGAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQ   
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 277 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKXXRXLQSIAEEXXXXXXXXXXXXSSYW 456
                              TYGKPK+HGVN+LK  +  Q++AE             +SYW
Sbjct: 61  VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120

Query: 457 VXQDSSYKYFEVILLDPSHXAIRRDP 534
           V +DS+YK++EV+L+DP H AIRR+P
Sbjct: 121 VAEDSTYKFYEVVLIDPFHKAIRRNP 146



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = +3

Query: 543 WIVNAVXKHREMRGLTSAXXXXXXXXXXXXXXQTKGGSRRAXWLXRXT 686
           WI   V KHRE RGLTSA               T+GGS+   W  + T
Sbjct: 150 WITKPVHKHREQRGLTSAGRKSRGLGKGWRFSATRGGSQAKNWKRKNT 197


>AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical
           protein Y47D3A.16 protein.
          Length = 580

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -1

Query: 246 SSGFVRPCGPGSAVHTS---QLTVLPYPHTQQKTHNIAQFFPIQLLNISVGTH 97
           S+   RP   GS+  T       V+  PHT   T N    F + LLN+S+  H
Sbjct: 526 STTTTRPSNVGSSASTPIPLPKRVIKLPHTHTSTQNAQYSFMLLLLNVSLFFH 578


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +3

Query: 765 LPLXXXLPTXPHPPGR*TKXFFFPPPXXPXPXTXPPXXXXPXXXFXXAADFPP 923
           LP     P  P PPG        PPP  P P   PP    P          PP
Sbjct: 735 LPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +3

Query: 765 LPLXXXLPTXPHPPGR*TKXFFFPPPXXPXPXTXPPXXXXPXXXFXXAADFPP 923
           LP     P  P PPG        PPP  P P   PP    P          PP
Sbjct: 735 LPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +3

Query: 765 LPLXXXLPTXPHPPGR*TKXFFFPPPXXPXPXTXPPXXXXPXXXFXXAADFPP 923
           LP     P  P PPG        PPP  P P   PP    P          PP
Sbjct: 318 LPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,736,913
Number of Sequences: 27780
Number of extensions: 364593
Number of successful extensions: 934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)