Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C02
         (971 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   155   1e-38
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   3.0  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    26   9.2  
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.2  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   9.2  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   9.2  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  155 bits (375), Expect = 1e-38
 Identities = 69/112 (61%), Positives = 83/112 (74%)
 Frame = +1

Query: 244 AIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKV 423
           A   VGK GP LLQD + +D    FDRERIPERVVHAKG+GAFG FE T DITKY+   +
Sbjct: 25  AAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFECTDDITKYTKHTM 84

Query: 424 FESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVXFYTDDGVWDXLGXTXP 579
           F  +GK+TP+  RFSTVGGE G+ DT RDPRGFA+ FYTD+G++D +G   P
Sbjct: 85  FSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALKFYTDEGIFDMVGNNTP 136


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 526 QQNLEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 401
           ++  E +E+Y+Q+  +         SV + + W Q+L+  CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 149 LGLLKPFCMFPSYYAAFVV*YHGATHW 69
           LG+ +PF ++ +Y    V  YH  + W
Sbjct: 334 LGISRPFMVYSTYQQVLVETYHQLSKW 360


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 301 DEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESI 435
           ++++ F  E  P+ V+ A GAG  G  E T  +    A KV++++
Sbjct: 59  NDIAQFLAEIHPDVVIFAAGAGGKGGPERTRAVDYEGAIKVYDAM 103


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 467 ENLTAIGVLLPMDSNTLAALYLVMS*VTSKYPKAPAPLACTTRSGIRSLSKDDIS 303
           + +  I  L    SNT A      S V + Y K+P  +A T R  I+S +K  IS
Sbjct: 294 DTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRL-IKSAAKWSIS 347


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 500 VSADPLSPPTVENLTAIGVLLPMDSNTL 417
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,576
Number of Sequences: 5004
Number of extensions: 51519
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)