Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_C02
(971 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 138 5e-33
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 136 3e-32
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 134 1e-31
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 30 2.4
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973... 30 2.4
01_05_0406 + 21875376-21875451,21875570-21875610,21876245-218763... 29 4.2
02_05_0376 + 28406547-28406870 29 5.6
12_02_0674 - 21745321-21746223,21746229-21747608 28 9.8
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 138 bits (335), Expect = 5e-33
Identities = 62/109 (56%), Positives = 81/109 (74%)
Frame = +1
Query: 253 TVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFES 432
TVG GP LL+D + ++++++FDRERIPERVVHA+GA A G+FEVTHDIT + A +
Sbjct: 33 TVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDITHLTCADFLRA 92
Query: 433 IGKRTPIAVRFSTVGGESGSADTVRDPRGFAVXFYTDDGVWDXLGXTXP 579
G +TP+ VRFSTV E GS +T+RDPRGFA+ FYT +G WD +G P
Sbjct: 93 PGVQTPVIVRFSTVIHERGSPETLRDPRGFAIKFYTREGNWDLVGNNFP 141
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 136 bits (328), Expect = 3e-32
Identities = 62/109 (56%), Positives = 78/109 (71%)
Frame = +1
Query: 253 TVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFES 432
TVG GP LL+D + +++++ F RERIPERVVHA+GA A G+FE THD+T + A S
Sbjct: 45 TVGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFECTHDVTDITCADFLRS 104
Query: 433 IGKRTPIAVRFSTVGGESGSADTVRDPRGFAVXFYTDDGVWDXLGXTXP 579
G +TP+ VRFSTV E GS +T+RDPRGFAV FYT +G WD LG P
Sbjct: 105 PGAQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNWDLLGNNFP 153
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 134 bits (324), Expect = 1e-31
Identities = 61/109 (55%), Positives = 81/109 (74%)
Frame = +1
Query: 253 TVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFES 432
TVG+ GP LL+D + +++++ FDRERIPERVVHA+GA A G+FEVTHDI+ + A +
Sbjct: 33 TVGERGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRA 92
Query: 433 IGKRTPIAVRFSTVGGESGSADTVRDPRGFAVXFYTDDGVWDXLGXTXP 579
G +TP+ VRFSTV E GS +T+RDPRGFAV FYT +G +D +G P
Sbjct: 93 PGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDLVGNNMP 141
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 30.3 bits (65), Expect = 2.4
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 247 IQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVF 426
++ +GK+ AL +D NF + SS D R+ E KG YF + + + A++
Sbjct: 32 MEKLGKDQDAL-EDANFQQKPSSVDLNRLMELANSEKGVSQMQYFVKHWEYKRANTARLL 90
Query: 427 -ESIG 438
E IG
Sbjct: 91 KEQIG 95
>03_06_0716 -
35695158-35696795,35697075-35697288,35697290-35697372,
35697695-35697865
Length = 701
Score = 30.3 bits (65), Expect = 2.4
Identities = 15/74 (20%), Positives = 34/74 (45%)
Frame = +1
Query: 175 ENFKGFSWXSSPLNLELLXGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHA 354
E++ W S P++ + + + +G+ GP ++ + + ER+ ++VV+A
Sbjct: 579 ESYVTLQWSSDPISDMVSDSVVAMVLNIGREGPKVVPVEEAVKTQE--ETERVAQKVVYA 636
Query: 355 KGAGAFGYFEVTHD 396
FG +V +
Sbjct: 637 LMVSLFGDVKVAEE 650
>01_05_0406 +
21875376-21875451,21875570-21875610,21876245-21876314,
21876410-21876558,21876671-21876766,21876863-21876933,
21877119-21877267,21877400-21877463,21877547-21877631,
21878079-21878139,21879005-21879144,21879266-21879559
Length = 431
Score = 29.5 bits (63), Expect = 4.2
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 53 SSRYAPSESLRGIKQRTPHSKKGTYKMASRDPATDQLINYKKTLKDSPGFH 205
SSR S + RTP + GT++ ++ + Q+++Y S G H
Sbjct: 355 SSRELQSSEAEPSRSRTPDASPGTFQRSAPPRRSSQMLDYSDPRHSSSGRH 405
>02_05_0376 + 28406547-28406870
Length = 107
Score = 29.1 bits (62), Expect = 5.6
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 173 KKTLKDSPGFHHH*IWSSXLESKRRYKR-WARMVQPY 280
K T+ +PG HHH S + RR W MV PY
Sbjct: 9 KATICRTPGNHHHGTTSELRAASRRASSLWEEMVLPY 45
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 28.3 bits (60), Expect = 9.8
Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = -1
Query: 557 SHTPSSV*NXTAKPRGSRTVSADPLSPPTVENLTA--IGVL-LPMDSNTLAALYLVMS*V 387
S TPS+ T+ + S T S PLS T++ T G L P D +S
Sbjct: 589 SSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTARTGELSTPTDKIPTTTRAGDLSTA 648
Query: 386 TSKYPKAPAPL-ACTTRSGIRSLS 318
TSK P AP TT S I S S
Sbjct: 649 TSKIPTAPGTSELSTTTSKISSTS 672
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,705,976
Number of Sequences: 37544
Number of extensions: 375217
Number of successful extensions: 869
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2823252340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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