Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C01
         (944 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.57 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.76 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = +2

Query: 527  PXXXPPPPPXXPPXXPGPXPPPLPXXVTXPPNXATIPXXVRXPPP 661
            P   P  P   P   PGP    +P  +   P+    P     PPP
Sbjct: 1124 PQLKPQKPFTSPGGIPGPNGIKMPSFMEGMPHLPFTPFNFWNPPP 1168


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 521 TPPXXXPPPPPXXPPXXPGP 580
           TPP   PPPP   PP   GP
Sbjct: 337 TPPKPAPPPP---PPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 749 PPPPXXXPPPPT 784
           PP P   PPPP+
Sbjct: 338 PPKPAPPPPPPS 349



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 697 PPXXXPPPHPP 729
           PP   PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +2

Query: 563 PXXPGPXPPPLPXXVTXPPNXATIPXXVRXPPP 661
           P    P P P P      P   + P   + PPP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +2

Query: 521 TPPXXXPPPPPXXPPXXPGPXPP 589
           +PP     PPP  PP  P    P
Sbjct: 38  SPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +2

Query: 524 PPXXXPPPPPXXPPXXPGPXPPP 592
           P    PP P   PP    P  PP
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 627 PQSLDXFGPPPPXXPSXTLHSQXPPXFXPTXPPP 728
           PQ      P  P   S    SQ PP   P   PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 511 PQXNPPPXPXPXPPXXPP 564
           PQ   PP P   PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGP 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,806
Number of Sequences: 438
Number of extensions: 10050
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)