Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B24
         (1067 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    42   1e-04
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.9  

>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 165 NEETPLPRAWSTKDKFS*IGLSQNNLRVHYXG-XGXTHRDAASVRATHPIPA 317
           N    +P +W+  DK   + L  NN+ V++ G    T  DAASV+A H IP+
Sbjct: 58  NTPKAIPSSWNPNDKSDSLELMNNNMGVYFFGPEAGTEHDAASVKADHAIPS 109



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 313 PPPCGLYYFEVRIVSKGRXG*WG-XXCR 393
           P    +YY+E++I+S+G+ G  G   CR
Sbjct: 108 PSNTSIYYYEIQILSRGKEGKMGVGFCR 135


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 766 PPTAFQXPSXFXXCPXLPSXXGPPXXP 846
           PP +FQ PS       LPS   PP  P
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPP 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,464
Number of Sequences: 5004
Number of extensions: 41703
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 563206452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)