Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B24
(1067 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 32 0.68
01_01_0082 + 625198-625719 30 2.7
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 30 3.6
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 30 3.6
12_02_1174 - 26696869-26698191 29 6.3
04_04_1542 - 34264994-34265331,34266195-34267029 29 6.3
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 29 8.3
03_05_0576 + 25765137-25766420 29 8.3
02_05_0686 - 30900748-30902167,30903442-30904742 29 8.3
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 32.3 bits (70), Expect = 0.68
Identities = 19/69 (27%), Positives = 22/69 (31%)
Frame = +1
Query: 652 PXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPXLPSXXG 831
P P + P P PP G T PPP P+ P +PS
Sbjct: 654 PAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVPSAPP 713
Query: 832 PPXXPNHRN 858
PP P N
Sbjct: 714 PPPPPPPAN 722
>01_01_0082 + 625198-625719
Length = 173
Score = 30.3 bits (65), Expect = 2.7
Identities = 17/62 (27%), Positives = 20/62 (32%)
Frame = +1
Query: 652 PXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPXLPSXXG 831
P P+PP PP P G P P PS + P +PS
Sbjct: 74 PPPSPPPVAYPPPTTPSTNCPPPPYGGGGYNPTPSYNPTPGYNPTPSGWFTPPNMPSYLT 133
Query: 832 PP 837
PP
Sbjct: 134 PP 135
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 29.9 bits (64), Expect = 3.6
Identities = 17/60 (28%), Positives = 20/60 (33%)
Frame = +1
Query: 667 PSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPXLPSXXGPPXXP 846
PS + PP P PP + PPP P+ P LP PP P
Sbjct: 200 PSTLPPPPPPPPLPASSEPVDPSAASLPPLPPPPPPP-PKPANIAGAPGLPLPPPPPPPP 258
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.9 bits (64), Expect = 3.6
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +1
Query: 577 FSTHFXPXTXXXXXPXXXLSSTXXRPXPNPPSXVXPPXPXPP 702
FST P T P P P PP PP P PP
Sbjct: 324 FSTGSTPDTKQVTSPSPRPVQPSNAPPPPPPPPPPPPPPPPP 365
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 6.3
Identities = 18/60 (30%), Positives = 20/60 (33%)
Frame = +1
Query: 658 PNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPXLPSXXGPP 837
P PP + PP P PP PPP + Q PS P P PP
Sbjct: 146 PQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPP-SLQPPSPPPPPPTRPPSVKPP 204
>04_04_1542 - 34264994-34265331,34266195-34267029
Length = 390
Score = 29.1 bits (62), Expect = 6.3
Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Frame = +1
Query: 652 PXPNPPSXVXP-PXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPXLPSXX 828
P P PP P P P PP HG + PPP Q P P P+
Sbjct: 215 PTPPPPPLALPLPPPPPPSPPKPLVAQQQHHHHGHHHHPPPP--QPPPSSLQLP--PAVV 270
Query: 829 GPP 837
PP
Sbjct: 271 APP 273
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 28.7 bits (61), Expect = 8.3
Identities = 20/74 (27%), Positives = 24/74 (32%)
Frame = +1
Query: 631 LSSTXXRPXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCP 810
L+++ P P PP P P PP T T P P A P+ P
Sbjct: 73 LAASPPPPPPPPPPRNSPSPPKPPSQAAQSPLPPTTTTTTPPTAPVPAAAPPPT----AP 128
Query: 811 XLPSXXGPPXXPNH 852
S P P H
Sbjct: 129 SPYSAPSPTPTPTH 142
>03_05_0576 + 25765137-25766420
Length = 427
Score = 28.7 bits (61), Expect = 8.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 957 PXAFXXPLXYXTPNPPHQSTSPRXXPPQXSPA 1052
P A P +P+PP Q +SP PP PA
Sbjct: 65 PEAPPSPSPSPSPSPPPQPSSPPPPPPSPPPA 96
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 8.3
Identities = 19/66 (28%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Frame = +1
Query: 652 PXPNPPSXVXPPXPXPPXXXXXXXXXXG-TITHGXXNXPPPTAFQXPSXFXXCPXLPSXX 828
P P P+ PP P PP G PPP + PS P
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKG 375
Query: 829 GPPXXP 846
GPP P
Sbjct: 376 GPPPPP 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,435,139
Number of Sequences: 37544
Number of extensions: 395798
Number of successful extensions: 2628
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2335
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3176197312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -