SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B24
         (1067 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93020-1|CAI21594.1|  729|Homo sapiens RAN binding protein 9 pro...    92   3e-18
BC052781-1|AAH52781.1|  802|Homo sapiens RANBP9 protein protein.       92   3e-18
AL441883-5|CAI19841.1|  729|Homo sapiens RAN binding protein 9 p...    92   3e-18
AF064606-1|AAC17111.1|  243|Homo sapiens KB07 protein protein.         92   3e-18
AB055311-1|BAB62525.1|  729|Homo sapiens RanBPM protein.               92   3e-18
BC121177-1|AAI21178.1|  620|Homo sapiens RAN binding protein 10 ...    89   2e-17
BC121176-1|AAI21177.1|  620|Homo sapiens RAN binding protein 10 ...    89   2e-17
BC099917-1|AAH99917.1|  620|Homo sapiens RAN binding protein 10 ...    89   2e-17
AY337313-1|AAR01220.1|  620|Homo sapiens Ran-binding protein 10 ...    89   2e-17
AB040897-1|BAA95988.1|  621|Homo sapiens KIAA1464 protein protein.     89   2e-17
BC019886-1|AAH19886.1|  486|Homo sapiens Unknown (protein for IM...    87   8e-17
X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage f...    33   2.3  
X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.               33   2.3  
AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and polyadenyl...    33   2.3  
AB209431-1|BAD92668.1|  951|Homo sapiens TYRO3 protein tyrosine ...    32   3.1  
D88460-1|BAA20128.1|  505|Homo sapiens N-WASP protein.                 32   4.1  
BC052955-1|AAH52955.1|  505|Homo sapiens Wiskott-Aldrich syndrom...    32   4.1  
AM295156-1|CAL26602.1|  505|Homo sapiens WASL protein protein.         32   4.1  
AF306510-1|AAK15469.1|  500|Homo sapiens RANBPM protein.               32   4.1  
AC006333-1|AAQ96857.1|  505|Homo sapiens unknown protein.              32   4.1  
AB008515-1|BAA23216.1|  500|Homo sapiens RanBPM protein.               32   4.1  
BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.        31   5.4  

>Z93020-1|CAI21594.1|  729|Homo sapiens RAN binding protein 9
           protein.
          Length = 729

 Score = 92.3 bits (219), Expect = 3e-18
 Identities = 42/51 (82%), Positives = 45/51 (88%)
 Frame = +3

Query: 168 EETPLPRAWSTKDKFS*IGLSQNNLRVHYXGXGXTHRDAASVRATHPIPAA 320
           +ETPLPR+WS KDKFS IGLSQNNLRVHY G G T +DAASVRATHPIPAA
Sbjct: 161 QETPLPRSWSPKDKFSYIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAA 211



 Score = 39.1 bits (87), Expect = 0.027
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +1

Query: 313 PPPCGLYYFEVRIVSKGRXG*WG 381
           P  CG+YYFEV+IVSKGR G  G
Sbjct: 209 PAACGIYYFEVKIVSKGRDGYMG 231



 Score = 31.9 bits (69), Expect = 4.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 398 GVNMXXLPGWDNXSYG 445
           GVNM  LPGWD  SYG
Sbjct: 238 GVNMNRLPGWDKHSYG 253


>BC052781-1|AAH52781.1|  802|Homo sapiens RANBP9 protein protein.
          Length = 802

 Score = 92.3 bits (219), Expect = 3e-18
 Identities = 42/51 (82%), Positives = 45/51 (88%)
 Frame = +3

Query: 168 EETPLPRAWSTKDKFS*IGLSQNNLRVHYXGXGXTHRDAASVRATHPIPAA 320
           +ETPLPR+WS KDKFS IGLSQNNLRVHY G G T +DAASVRATHPIPAA
Sbjct: 234 QETPLPRSWSPKDKFSYIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAA 284



 Score = 39.1 bits (87), Expect = 0.027
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +1

Query: 313 PPPCGLYYFEVRIVSKGRXG*WG 381
           P  CG+YYFEV+IVSKGR G  G
Sbjct: 282 PAACGIYYFEVKIVSKGRDGYMG 304



 Score = 31.9 bits (69), Expect = 4.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 398 GVNMXXLPGWDNXSYG 445
           GVNM  LPGWD  SYG
Sbjct: 311 GVNMNRLPGWDKHSYG 326


>AL441883-5|CAI19841.1|  729|Homo sapiens RAN binding protein 9
           protein.
          Length = 729

 Score = 92.3 bits (219), Expect = 3e-18
 Identities = 42/51 (82%), Positives = 45/51 (88%)
 Frame = +3

Query: 168 EETPLPRAWSTKDKFS*IGLSQNNLRVHYXGXGXTHRDAASVRATHPIPAA 320
           +ETPLPR+WS KDKFS IGLSQNNLRVHY G G T +DAASVRATHPIPAA
Sbjct: 161 QETPLPRSWSPKDKFSYIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAA 211



 Score = 39.1 bits (87), Expect = 0.027
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +1

Query: 313 PPPCGLYYFEVRIVSKGRXG*WG 381
           P  CG+YYFEV+IVSKGR G  G
Sbjct: 209 PAACGIYYFEVKIVSKGRDGYMG 231



 Score = 31.9 bits (69), Expect = 4.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 398 GVNMXXLPGWDNXSYG 445
           GVNM  LPGWD  SYG
Sbjct: 238 GVNMNRLPGWDKHSYG 253


>AF064606-1|AAC17111.1|  243|Homo sapiens KB07 protein protein.
          Length = 243

 Score = 92.3 bits (219), Expect = 3e-18
 Identities = 42/51 (82%), Positives = 45/51 (88%)
 Frame = +3

Query: 168 EETPLPRAWSTKDKFS*IGLSQNNLRVHYXGXGXTHRDAASVRATHPIPAA 320
           +ETPLPR+WS KDKFS IGLSQNNLRVHY G G T +DAASVRATHPIPAA
Sbjct: 12  QETPLPRSWSPKDKFSYIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAA 62



 Score = 39.1 bits (87), Expect = 0.027
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +1

Query: 313 PPPCGLYYFEVRIVSKGRXG*WG 381
           P  CG+YYFEV+IVSKGR G  G
Sbjct: 60  PAACGIYYFEVKIVSKGRDGYMG 82



 Score = 31.9 bits (69), Expect = 4.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 398 GVNMXXLPGWDNXSYG 445
           GVNM  LPGWD  SYG
Sbjct: 89  GVNMNRLPGWDKHSYG 104


>AB055311-1|BAB62525.1|  729|Homo sapiens RanBPM protein.
          Length = 729

 Score = 92.3 bits (219), Expect = 3e-18
 Identities = 42/51 (82%), Positives = 45/51 (88%)
 Frame = +3

Query: 168 EETPLPRAWSTKDKFS*IGLSQNNLRVHYXGXGXTHRDAASVRATHPIPAA 320
           +ETPLPR+WS KDKFS IGLSQNNLRVHY G G T +DAASVRATHPIPAA
Sbjct: 161 QETPLPRSWSPKDKFSYIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAA 211



 Score = 39.1 bits (87), Expect = 0.027
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +1

Query: 313 PPPCGLYYFEVRIVSKGRXG*WG 381
           P  CG+YYFEV+IVSKGR G  G
Sbjct: 209 PAACGIYYFEVKIVSKGRDGYMG 231



 Score = 31.9 bits (69), Expect = 4.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 398 GVNMXXLPGWDNXSYG 445
           GVNM  LPGWD  SYG
Sbjct: 238 GVNMNRLPGWDKHSYG 253


>BC121177-1|AAI21178.1|  620|Homo sapiens RAN binding protein 10
           protein.
          Length = 620

 Score = 89.4 bits (212), Expect = 2e-17
 Identities = 39/51 (76%), Positives = 44/51 (86%)
 Frame = +3

Query: 168 EETPLPRAWSTKDKFS*IGLSQNNLRVHYXGXGXTHRDAASVRATHPIPAA 320
           +ETPLPR+WS KDK++ IGLSQ NLRVHY G G  H+DAASVRATHPIPAA
Sbjct: 49  QETPLPRSWSPKDKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAA 99



 Score = 39.1 bits (87), Expect = 0.027
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +1

Query: 313 PPPCGLYYFEVRIVSKGRXG*WG 381
           P  CG+YYFEV+IVSKGR G  G
Sbjct: 97  PAACGIYYFEVKIVSKGRDGYMG 119



 Score = 31.9 bits (69), Expect = 4.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 398 GVNMXXLPGWDNXSYG 445
           GVNM  LPGWD  SYG
Sbjct: 126 GVNMNRLPGWDKHSYG 141


>BC121176-1|AAI21177.1|  620|Homo sapiens RAN binding protein 10
           protein.
          Length = 620

 Score = 89.4 bits (212), Expect = 2e-17
 Identities = 39/51 (76%), Positives = 44/51 (86%)
 Frame = +3

Query: 168 EETPLPRAWSTKDKFS*IGLSQNNLRVHYXGXGXTHRDAASVRATHPIPAA 320
           +ETPLPR+WS KDK++ IGLSQ NLRVHY G G  H+DAASVRATHPIPAA
Sbjct: 49  QETPLPRSWSPKDKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAA 99



 Score = 39.1 bits (87), Expect = 0.027
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +1

Query: 313 PPPCGLYYFEVRIVSKGRXG*WG 381
           P  CG+YYFEV+IVSKGR G  G
Sbjct: 97  PAACGIYYFEVKIVSKGRDGYMG 119



 Score = 31.9 bits (69), Expect = 4.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 398 GVNMXXLPGWDNXSYG 445
           GVNM  LPGWD  SYG
Sbjct: 126 GVNMNRLPGWDKHSYG 141


>BC099917-1|AAH99917.1|  620|Homo sapiens RAN binding protein 10
           protein.
          Length = 620

 Score = 89.4 bits (212), Expect = 2e-17
 Identities = 39/51 (76%), Positives = 44/51 (86%)
 Frame = +3

Query: 168 EETPLPRAWSTKDKFS*IGLSQNNLRVHYXGXGXTHRDAASVRATHPIPAA 320
           +ETPLPR+WS KDK++ IGLSQ NLRVHY G G  H+DAASVRATHPIPAA
Sbjct: 49  QETPLPRSWSPKDKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAA 99



 Score = 39.1 bits (87), Expect = 0.027
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +1

Query: 313 PPPCGLYYFEVRIVSKGRXG*WG 381
           P  CG+YYFEV+IVSKGR G  G
Sbjct: 97  PAACGIYYFEVKIVSKGRDGYMG 119



 Score = 31.9 bits (69), Expect = 4.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 398 GVNMXXLPGWDNXSYG 445
           GVNM  LPGWD  SYG
Sbjct: 126 GVNMNRLPGWDKHSYG 141


>AY337313-1|AAR01220.1|  620|Homo sapiens Ran-binding protein 10
           protein.
          Length = 620

 Score = 89.4 bits (212), Expect = 2e-17
 Identities = 39/51 (76%), Positives = 44/51 (86%)
 Frame = +3

Query: 168 EETPLPRAWSTKDKFS*IGLSQNNLRVHYXGXGXTHRDAASVRATHPIPAA 320
           +ETPLPR+WS KDK++ IGLSQ NLRVHY G G  H+DAASVRATHPIPAA
Sbjct: 49  QETPLPRSWSPKDKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAA 99



 Score = 39.1 bits (87), Expect = 0.027
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +1

Query: 313 PPPCGLYYFEVRIVSKGRXG*WG 381
           P  CG+YYFEV+IVSKGR G  G
Sbjct: 97  PAACGIYYFEVKIVSKGRDGYMG 119



 Score = 31.9 bits (69), Expect = 4.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 398 GVNMXXLPGWDNXSYG 445
           GVNM  LPGWD  SYG
Sbjct: 126 GVNMNRLPGWDKHSYG 141


>AB040897-1|BAA95988.1|  621|Homo sapiens KIAA1464 protein protein.
          Length = 621

 Score = 89.4 bits (212), Expect = 2e-17
 Identities = 39/51 (76%), Positives = 44/51 (86%)
 Frame = +3

Query: 168 EETPLPRAWSTKDKFS*IGLSQNNLRVHYXGXGXTHRDAASVRATHPIPAA 320
           +ETPLPR+WS KDK++ IGLSQ NLRVHY G G  H+DAASVRATHPIPAA
Sbjct: 50  QETPLPRSWSPKDKYNYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAA 100



 Score = 39.1 bits (87), Expect = 0.027
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +1

Query: 313 PPPCGLYYFEVRIVSKGRXG*WG 381
           P  CG+YYFEV+IVSKGR G  G
Sbjct: 98  PAACGIYYFEVKIVSKGRDGYMG 120



 Score = 31.9 bits (69), Expect = 4.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 398 GVNMXXLPGWDNXSYG 445
           GVNM  LPGWD  SYG
Sbjct: 127 GVNMNRLPGWDKHSYG 142


>BC019886-1|AAH19886.1|  486|Homo sapiens Unknown (protein for
           IMAGE:4419330) protein.
          Length = 486

 Score = 87.4 bits (207), Expect = 8e-17
 Identities = 40/48 (83%), Positives = 42/48 (87%)
 Frame = +3

Query: 177 PLPRAWSTKDKFS*IGLSQNNLRVHYXGXGXTHRDAASVRATHPIPAA 320
           PLPR+WS KDKFS IGLSQNNLRVHY G G T +DAASVRATHPIPAA
Sbjct: 1   PLPRSWSPKDKFSYIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAA 48



 Score = 39.1 bits (87), Expect = 0.027
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +1

Query: 313 PPPCGLYYFEVRIVSKGRXG*WG 381
           P  CG+YYFEV+IVSKGR G  G
Sbjct: 46  PAACGIYYFEVKIVSKGRDGYMG 68



 Score = 31.9 bits (69), Expect = 4.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 398 GVNMXXLPGWDNXSYG 445
           GVNM  LPGWD  SYG
Sbjct: 75  GVNMNRLPGWDKHSYG 90


>X67337-1|CAA47752.1|  551|Homo sapiens Human pre-mRNA cleavage
           factor I 68 kDa subunit protein.
          Length = 551

 Score = 32.7 bits (71), Expect = 2.3
 Identities = 22/73 (30%), Positives = 23/73 (31%)
 Frame = +1

Query: 619 PXXXLSSTXXRPXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXF 798
           P      T  RP   PP    PP P PP          G    G  + PPP        F
Sbjct: 228 PPFPAGQTPPRPPLGPPGPPGPPGP-PPPGQVLPPPLAGPPNRG--DRPPPPVLFPGQPF 284

Query: 799 XXCPXLPSXXGPP 837
              P  P   GPP
Sbjct: 285 GQPPLGPLPPGPP 297


>X67336-1|CAA47751.1|  551|Homo sapiens HPBRII-7 protein.
          Length = 551

 Score = 32.7 bits (71), Expect = 2.3
 Identities = 22/73 (30%), Positives = 23/73 (31%)
 Frame = +1

Query: 619 PXXXLSSTXXRPXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXF 798
           P      T  RP   PP    PP P PP          G    G  + PPP        F
Sbjct: 228 PPFPAGQTPPRPPLGPPGPPGPPGP-PPPGQVLPPPLAGPPNRG--DRPPPPVLFPGQPF 284

Query: 799 XXCPXLPSXXGPP 837
              P  P   GPP
Sbjct: 285 GQPPLGPLPPGPP 297


>AK223568-1|BAD97288.1|  551|Homo sapiens cleavage and
           polyadenylation specific factor 6, 68 kD subunit variant
           protein.
          Length = 551

 Score = 32.7 bits (71), Expect = 2.3
 Identities = 22/73 (30%), Positives = 23/73 (31%)
 Frame = +1

Query: 619 PXXXLSSTXXRPXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXF 798
           P      T  RP   PP    PP P PP          G    G  + PPP        F
Sbjct: 228 PPFPAGQTPPRPPLGPPGPPGPPGP-PPPGQVLPPPLAGPPNRG--DRPPPPVLFPGQPF 284

Query: 799 XXCPXLPSXXGPP 837
              P  P   GPP
Sbjct: 285 GQPPLGPLPPGPP 297


>AB209431-1|BAD92668.1|  951|Homo sapiens TYRO3 protein tyrosine
           kinase variant protein.
          Length = 951

 Score = 32.3 bits (70), Expect = 3.1
 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
 Frame = +1

Query: 637 STXXRPXPNPPSXVXPPXP-XPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPX 813
           ST  R  P PP+ + PP P  PP          G   HG  +  PP A +        P 
Sbjct: 18  STAPRAAPAPPAALLPPAPFPPPPPRPPPSSLAGRARHGAAS--PPMALRRSMGRPGLPP 75

Query: 814 LPSXXGP 834
           LP    P
Sbjct: 76  LPLPPPP 82


>D88460-1|BAA20128.1|  505|Homo sapiens N-WASP protein.
          Length = 505

 Score = 31.9 bits (69), Expect = 4.1
 Identities = 26/74 (35%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
 Frame = +1

Query: 652 PXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPP---PTAFQXPSXFXXCPXLPS 822
           P P PPS   PP P PP               G    PP   PTA   P      P  PS
Sbjct: 277 PPPPPPSRGGPPPPPPPPHSSGPPPPPAR-GRGAPPPPPSRAPTAAPPPPP----PSRPS 331

Query: 823 XXGPPXXPNHRNWP 864
              PP  PN R +P
Sbjct: 332 VEVPPPPPN-RMYP 344


>BC052955-1|AAH52955.1|  505|Homo sapiens Wiskott-Aldrich
           syndrome-like protein.
          Length = 505

 Score = 31.9 bits (69), Expect = 4.1
 Identities = 26/74 (35%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
 Frame = +1

Query: 652 PXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPP---PTAFQXPSXFXXCPXLPS 822
           P P PPS   PP P PP               G    PP   PTA   P      P  PS
Sbjct: 277 PPPPPPSRGGPPPPPPPPHNSGPPPPPAR-GRGAPPPPPSRAPTAAPPPPP----PSRPS 331

Query: 823 XXGPPXXPNHRNWP 864
              PP  PN R +P
Sbjct: 332 VAVPPPPPN-RMYP 344


>AM295156-1|CAL26602.1|  505|Homo sapiens WASL protein protein.
          Length = 505

 Score = 31.9 bits (69), Expect = 4.1
 Identities = 26/74 (35%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
 Frame = +1

Query: 652 PXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPP---PTAFQXPSXFXXCPXLPS 822
           P P PPS   PP P PP               G    PP   PTA   P      P  PS
Sbjct: 277 PPPPPPSRGGPPPPPPPPHNSGPPPPPAR-GRGAPPPPPSRAPTAAPPPPP----PSRPS 331

Query: 823 XXGPPXXPNHRNWP 864
              PP  PN R +P
Sbjct: 332 VAVPPPPPN-RMYP 344


>AF306510-1|AAK15469.1|  500|Homo sapiens RANBPM protein.
          Length = 500

 Score = 31.9 bits (69), Expect = 4.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 398 GVNMXXLPGWDNXSYG 445
           GVNM  LPGWD  SYG
Sbjct: 9   GVNMNRLPGWDKHSYG 24


>AC006333-1|AAQ96857.1|  505|Homo sapiens unknown protein.
          Length = 505

 Score = 31.9 bits (69), Expect = 4.1
 Identities = 26/74 (35%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
 Frame = +1

Query: 652 PXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPP---PTAFQXPSXFXXCPXLPS 822
           P P PPS   PP P PP               G    PP   PTA   P      P  PS
Sbjct: 277 PPPPPPSRGGPPPPPPPPHNSGPPPPPAR-GRGAPPPPPSRAPTAAPPPPP----PSRPS 331

Query: 823 XXGPPXXPNHRNWP 864
              PP  PN R +P
Sbjct: 332 VAVPPPPPN-RMYP 344


>AB008515-1|BAA23216.1|  500|Homo sapiens RanBPM protein.
          Length = 500

 Score = 31.9 bits (69), Expect = 4.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 398 GVNMXXLPGWDNXSYG 445
           GVNM  LPGWD  SYG
Sbjct: 9   GVNMNRLPGWDKHSYG 24


>BC000714-1|AAH00714.1|  588|Homo sapiens CPSF6 protein protein.
          Length = 588

 Score = 31.5 bits (68), Expect = 5.4
 Identities = 21/66 (31%), Positives = 22/66 (33%)
 Frame = +1

Query: 640 TXXRPXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPXLP 819
           T  RP   PP    PP P PP          G    G  + PPP        F   P  P
Sbjct: 272 TPPRPPLGPPGPPGPPGP-PPPGQVLPPPLAGPPNRG--DRPPPPVLFPGQPFGQPPLGP 328

Query: 820 SXXGPP 837
              GPP
Sbjct: 329 LPPGPP 334


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,047,844
Number of Sequences: 237096
Number of extensions: 1998830
Number of successful extensions: 13998
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 8662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12890
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14594798064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -