Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B24
(1067 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical p... 33 0.35
U80952-2|AAB38094.1| 309|Caenorhabditis elegans Muscle attachme... 29 4.3
U80952-1|AAU20846.1| 315|Caenorhabditis elegans Muscle attachme... 29 4.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 7.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 7.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 7.5
>U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical
protein B0207.1 protein.
Length = 564
Score = 33.1 bits (72), Expect = 0.35
Identities = 20/74 (27%), Positives = 22/74 (29%)
Frame = +1
Query: 631 LSSTXXRPXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCP 810
L T P P P PP P PP + PPP P P
Sbjct: 82 LPPTVQEPLPTPVKT--PPLPRPPGNLNPVQQPQIPVQRTPPQCPPPPVPHPPQITQMAP 139
Query: 811 XLPSXXGPPXXPNH 852
LP+ PP H
Sbjct: 140 ILPTSPAPPPPIPH 153
>U80952-2|AAB38094.1| 309|Caenorhabditis elegans Muscle attachment
abnormal protein1, isoform a protein.
Length = 309
Score = 29.5 bits (63), Expect = 4.3
Identities = 18/71 (25%), Positives = 25/71 (35%)
Frame = +3
Query: 855 QLASHPLLRGAPGXSRXXPXXXXXXXXXXXXXXPPXAFXXPLXYXTPNPPHQSTSPRXXP 1034
+LA PL+ PG + P P F P +P+PP P P
Sbjct: 35 RLAFSPLITPNPGAKQFAPIHVPGREPPRMLLPPTPHFQAPF---SPHPPPVQQVPSYSP 91
Query: 1035 PQXSPAXHSXP 1067
P P+ + P
Sbjct: 92 PHAPPSYETYP 102
>U80952-1|AAU20846.1| 315|Caenorhabditis elegans Muscle attachment
abnormal protein1, isoform b protein.
Length = 315
Score = 29.5 bits (63), Expect = 4.3
Identities = 18/71 (25%), Positives = 25/71 (35%)
Frame = +3
Query: 855 QLASHPLLRGAPGXSRXXPXXXXXXXXXXXXXXPPXAFXXPLXYXTPNPPHQSTSPRXXP 1034
+LA PL+ PG + P P F P +P+PP P P
Sbjct: 41 RLAFSPLITPNPGAKQFAPIHVPGREPPRMLLPPTPHFQAPF---SPHPPPVQQVPSYSP 97
Query: 1035 PQXSPAXHSXP 1067
P P+ + P
Sbjct: 98 PHAPPSYETYP 108
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 5.7
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = +1
Query: 649 RPXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPXLP 819
RP P P S + PP P PP G PPP+ F P P P
Sbjct: 286 RPPPPPSSGMWPPPPPPPPGRTPGPPG----MPGMPPPPPPSRFGPPGMGGMPPPPP 338
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 5.7
Identities = 18/57 (31%), Positives = 20/57 (35%)
Frame = +1
Query: 649 RPXPNPPSXVXPPXPXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPXLP 819
RP P P S + PP P PP G PPP+ F P P P
Sbjct: 296 RPPPPPSSGMWPPPPPPPPGRTPGPPG----MPGMPPPPPPSRFGPPGMGGMPPPPP 348
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 7.5
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Frame = +1
Query: 652 PXPNPPSXVXPPX------PXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPX 813
P P PP PP P PP G+ PPPT P P
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGS------PPPPPTGSPPPPPAGGSPP 290
Query: 814 LPSXXGPPXXPNHRNWPXT 870
P PP P R P T
Sbjct: 291 PPRAGSPPPPPPPRGSPPT 309
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 7.5
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Frame = +1
Query: 652 PXPNPPSXVXPPX------PXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPX 813
P P PP PP P PP G+ PPPT P P
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGS------PPPPPTGSPPPPPAGGSPP 311
Query: 814 LPSXXGPPXXPNHRNWPXT 870
P PP P R P T
Sbjct: 312 PPRAGSPPPPPPPRGSPPT 330
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 7.5
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Frame = +1
Query: 652 PXPNPPSXVXPPX------PXPPXXXXXXXXXXGTITHGXXNXPPPTAFQXPSXFXXCPX 813
P P PP PP P PP G+ PPPT P P
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGS------PPPPPTGSPPPPPAGGSPP 296
Query: 814 LPSXXGPPXXPNHRNWPXT 870
P PP P R P T
Sbjct: 297 PPRAGSPPPPPPPRGSPPT 315
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,479,749
Number of Sequences: 27780
Number of extensions: 274474
Number of successful extensions: 1061
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2856190974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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