Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B23
(1060 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.34
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 32 0.79
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.8
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 1.8
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 1.8
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 30 2.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 3.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 3.2
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 30 3.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 3.2
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 30 3.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.2
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 29 5.6
U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical pr... 29 5.6
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 5.6
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 7.4
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 7.4
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 29 7.4
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 7.4
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 7.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 9.8
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 9.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 9.8
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 33.1 bits (72), Expect = 0.34
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = +2
Query: 482 PXSXSXXGGNTAPPHP---IPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPX 652
P S GG++ PP P +P T + PP TPP P PP +P
Sbjct: 127 PPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRR-------PPRTPPSPE 179
Query: 653 KRNP 664
RNP
Sbjct: 180 PRNP 183
Score = 28.7 bits (61), Expect = 7.4
Identities = 18/60 (30%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Frame = +3
Query: 558 PRXPXAXXRPPXLQPXXAXXWXXPPXGXAPPXREIPQXSXX-PPHQXAXPXQXPPPHLLS 734
P P PP P PP P R P PP P PPP L S
Sbjct: 141 PPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPRLNS 200
Score = 28.3 bits (60), Expect = 9.8
Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Frame = +2
Query: 518 PPHPIP-----GTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPS 667
PP P P G + PP P TPP S PP R P + PS
Sbjct: 123 PPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPS 177
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 31.9 bits (69), Expect = 0.79
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 515 APPHPIPGTXARKXPPXPXGXXTPPXPST 601
AP + T +R+ PP P G TPP P T
Sbjct: 20 APRFSVGETASRRPPPPPKGTGTPPPPPT 48
Score = 30.7 bits (66), Expect = 1.8
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +2
Query: 536 GTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXGXTPTXX 715
G +R+ PP P G TPP P T R P P PT P P
Sbjct: 183 GNASRRPPPPPKGTGTPPPPPTGEPQDLSAEGYASRRPPP-PPKGTGSPTPPPTGEPQDL 241
Query: 716 S 718
S
Sbjct: 242 S 242
Score = 30.3 bits (65), Expect = 2.4
Identities = 16/54 (29%), Positives = 18/54 (33%)
Frame = +2
Query: 536 GTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697
G +R+ PP P G TPP P T R P P P G
Sbjct: 90 GNASRRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTG 143
Score = 29.9 bits (64), Expect = 3.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 536 GTXARKXPPXPXGXXTPPXPST 601
G +R+ PP P G TPP P T
Sbjct: 58 GNASRRPPPPPKGTGTPPPPPT 79
Score = 29.5 bits (63), Expect = 4.2
Identities = 15/54 (27%), Positives = 18/54 (33%)
Frame = +2
Query: 536 GTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697
G +R+ PP P G +PP P T R P P P G
Sbjct: 152 GNASRRPPPPPKGTGSPPPPPTGEPQDLSTEGNASRRPPPPPKGTGTPPPPPTG 205
Score = 29.5 bits (63), Expect = 4.2
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Frame = +2
Query: 482 PXSXSXXGGNTAPPHPIP------GTXARKXPPXPXGXXTPPXPST 601
P G T PP P G +R+ PP P G +PP P T
Sbjct: 221 PPPPKGTGSPTPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPT 266
Score = 28.7 bits (61), Expect = 7.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 536 GTXARKXPPXPXGXXTPPXPS 598
G +R+ PP P G TPP P+
Sbjct: 276 GNASRRPPPPPKGTGTPPPPT 296
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 30.7 bits (66), Expect = 1.8
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +2
Query: 533 PGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697
PG+ + PP P G P P+ G P AP + S P P G
Sbjct: 182 PGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPG 236
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 30.7 bits (66), Expect = 1.8
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +2
Query: 533 PGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697
PG+ + PP P G P P+ G P AP + S P P G
Sbjct: 177 PGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPG 231
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +2
Query: 506 GNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAP 649
G PP P PG PP P G P P GA P P
Sbjct: 222 GPPGPPGP-PGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPPGP 268
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 30.7 bits (66), Expect = 1.8
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +2
Query: 533 PGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697
PG+ + PP P G P P+ G P AP + S P P G
Sbjct: 177 PGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPG 231
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +2
Query: 506 GNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAP 649
G PP P PG PP P G P P GA P P
Sbjct: 222 GPPGPPGP-PGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPPGP 268
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/53 (26%), Positives = 18/53 (33%)
Frame = +2
Query: 506 GNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNP 664
GN P + ++ PP P G PP P+ G P P P
Sbjct: 223 GNPGAPGAVTEVPGQQGPPGPPGPAGPPGPAGNAGQAGYAQPGPAGPPGDAGP 275
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 3.2
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +1
Query: 775 PPPSXSTXXPHPPPPXXXGXXXXXXXXXXXXPAPXXIXXXXXKXXPXSXAPXPXXPLXPP 954
PPP PPPP G P P + P P P PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
Query: 955 P 957
P
Sbjct: 775 P 775
Score = 29.5 bits (63), Expect = 4.2
Identities = 18/65 (27%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Frame = +2
Query: 482 PXSXSXXGGNTAPPHPIPGTXARKXPPXPXGXXT--PPXPSTXXGAXXXVPPXXXRAPXK 655
P G PP P PG PP P G PP P P P K
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPK 807
Query: 656 RNPSI 670
+ P +
Sbjct: 808 KVPKV 812
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = +3
Query: 567 PXAXXRPPXLQPXXAXXWXXPPXGXAPPXREIPQXSXXPPHQXAXPXQXPPP 722
P P L P PP G PP P PP P PPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 3.2
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +1
Query: 775 PPPSXSTXXPHPPPPXXXGXXXXXXXXXXXXPAPXXIXXXXXKXXPXSXAPXPXXPLXPP 954
PPP PPPP G P P + P P P PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
Query: 955 P 957
P
Sbjct: 775 P 775
Score = 29.5 bits (63), Expect = 4.2
Identities = 18/65 (27%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Frame = +2
Query: 482 PXSXSXXGGNTAPPHPIPGTXARKXPPXPXGXXT--PPXPSTXXGAXXXVPPXXXRAPXK 655
P G PP P PG PP P G PP P P P K
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPK 807
Query: 656 RNPSI 670
+ P +
Sbjct: 808 KVPKV 812
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = +3
Query: 567 PXAXXRPPXLQPXXAXXWXXPPXGXAPPXREIPQXSXXPPHQXAXPXQXPPP 722
P P L P PP G PP P PP P PPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.9 bits (64), Expect = 3.2
Identities = 22/85 (25%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Frame = +2
Query: 476 TDPXSXSXXGGNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVP----PXXXR 643
T + S G PP P+P + P G +P PS P P
Sbjct: 913 TTSSTESFTRGGFIPPIPVPNPIPKPNPGPGPGPPSPNGPSDPNKPSPNGPSPNGPNGPS 972
Query: 644 APXKRNPSIXQXPTXPXGXTPTXXS 718
P K PS P+ P +P S
Sbjct: 973 DPNKPGPSGPNGPSDPNKPSPNGPS 997
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 3.2
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +1
Query: 775 PPPSXSTXXPHPPPPXXXGXXXXXXXXXXXXPAPXXIXXXXXKXXPXSXAPXPXXPLXPP 954
PPP PPPP G P P + P P P PP
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357
Query: 955 P 957
P
Sbjct: 358 P 358
Score = 29.5 bits (63), Expect = 4.2
Identities = 18/65 (27%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Frame = +2
Query: 482 PXSXSXXGGNTAPPHPIPGTXARKXPPXPXGXXT--PPXPSTXXGAXXXVPPXXXRAPXK 655
P G PP P PG PP P G PP P P P K
Sbjct: 331 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPK 390
Query: 656 RNPSI 670
+ P +
Sbjct: 391 KVPKV 395
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = +3
Query: 567 PXAXXRPPXLQPXXAXXWXXPPXGXAPPXREIPQXSXXPPHQXAXPXQXPPP 722
P P L P PP G PP P PP P PPP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 29.9 bits (64), Expect = 3.2
Identities = 22/75 (29%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Frame = +2
Query: 482 PXSXSXXGGNTAPPHP-IPGTXARKXPPXPXGXXTPPXPSTXXG--AXXXVPPXXXRAPX 652
P G N P P PG A PP P G PP G VP P
Sbjct: 194 PGKQGPKGPNGEPGAPGTPGGNALPGPPGPPGPQGPPGADGLPGNPGAPGVPGQVIEVPG 253
Query: 653 KRNPSIXQXPTXPXG 697
P+ P P G
Sbjct: 254 TPGPAGPPGPPGPIG 268
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 4.2
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Frame = +2
Query: 506 GNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPT 685
G+ PP P G+ P P +PP T PP R +R+P PT
Sbjct: 295 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGT---GSPPPPPRQKRQAPERSPPTGSPPT 351
Query: 686 --XPXGXTP 706
P G P
Sbjct: 352 GSPPTGRPP 360
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985
PPP + P +P PP P S PP + P P P
Sbjct: 264 PPPPRTGSPPPPPTGSP-PPPPAGGSPPPPRAGSPPPPP 301
Score = 28.3 bits (60), Expect = 9.8
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985
PPP P +P PP P S PP + P P P
Sbjct: 239 PPPPPKGSPPLAGSGSPPPP-PAAGSPPPPRTGSPPPPP 276
Score = 28.3 bits (60), Expect = 9.8
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +2
Query: 872 PPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985
PP P P PP P S PP + P P P
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 4.2
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Frame = +2
Query: 506 GNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPT 685
G+ PP P G+ P P +PP T PP R +R+P PT
Sbjct: 316 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGT---GSPPPPPRQKRQAPERSPPTGSPPT 372
Query: 686 --XPXGXTP 706
P G P
Sbjct: 373 GSPPTGRPP 381
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985
PPP + P +P PP P S PP + P P P
Sbjct: 285 PPPPRTGSPPPPPTGSP-PPPPAGGSPPPPRAGSPPPPP 322
Score = 28.3 bits (60), Expect = 9.8
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985
PPP P +P PP P S PP + P P P
Sbjct: 260 PPPPPKGSPPLAGSGSPPPP-PAAGSPPPPRTGSPPPPP 297
Score = 28.3 bits (60), Expect = 9.8
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +2
Query: 872 PPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985
PP P P PP P S PP + P P P
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 4.2
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Frame = +2
Query: 506 GNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPT 685
G+ PP P G+ P P +PP T PP R +R+P PT
Sbjct: 301 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGT---GSPPPPPRQKRQAPERSPPTGSPPT 357
Query: 686 --XPXGXTP 706
P G P
Sbjct: 358 GSPPTGRPP 366
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985
PPP + P +P PP P S PP + P P P
Sbjct: 270 PPPPRTGSPPPPPTGSP-PPPPAGGSPPPPRAGSPPPPP 307
Score = 28.3 bits (60), Expect = 9.8
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985
PPP P +P PP P S PP + P P P
Sbjct: 245 PPPPPKGSPPLAGSGSPPPP-PAAGSPPPPRTGSPPPPP 282
Score = 28.3 bits (60), Expect = 9.8
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +2
Query: 872 PPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985
PP P P PP P S PP + P P P
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 29.1 bits (62), Expect = 5.6
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +2
Query: 482 PXSXSXXGGNTAPPHPIP-GTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKR 658
P G N P P G A P P G PP P GA P +P K
Sbjct: 146 PGQPGIPGDNGPPGEQGPKGPDAAPGEPGPKGPIGPPGPPGQAGA-----PGEPGSPAKS 200
Query: 659 NPSIXQXPTXP 691
P++ P P
Sbjct: 201 EPAVPGPPGPP 211
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 29.1 bits (62), Expect = 5.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 503 GGNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXG 610
GG+ APP P P A P P P P+ G
Sbjct: 36 GGDAAPPPPPPADAAPAPAPAPEPEAAPAAPAADAG 71
>U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical
protein F26A1.11 protein.
Length = 239
Score = 29.1 bits (62), Expect = 5.6
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 902 RXPXTPXPPXPXXPSXPPXXSXXPXPXPXQ 991
R P P PP P P PP P P Q
Sbjct: 32 RPPRPPRPPSPSRPQRPPPSRPQRPPPPRQ 61
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.1 bits (62), Expect = 5.6
Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Frame = +2
Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXP---SXPPXXSXXPXPXPXQLXS 1000
PPP P TP PP P P S P P P P L S
Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFS 1384
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 28.7 bits (61), Expect = 7.4
Identities = 15/55 (27%), Positives = 18/55 (32%)
Frame = +2
Query: 533 PGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697
PG + PP P G P P G P AP + + P P G
Sbjct: 184 PGLPGPRGPPGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPG 238
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.7 bits (61), Expect = 7.4
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXP 979
PPP P P PP P PS P S P P
Sbjct: 58 PPPMCPPPPPPPPPPMCPPPPPPMPSYSPCQSYAPAP 94
Score = 28.3 bits (60), Expect = 9.8
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +3
Query: 585 PPXLQPXXAXXWXXPPXGXAPPXREIPQXSXXPPHQXAXPXQXPPP 722
PP P PP PP PQ PP P PPP
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPP 72
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 28.7 bits (61), Expect = 7.4
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -2
Query: 984 GWGXGXXEXXGGXEGXXGXGGXGVXGXLXGXXXYXXGGG 868
G+G G GG G G GG G L G GGG
Sbjct: 65 GFGGGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGGGGG 103
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.7 bits (61), Expect = 7.4
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -2
Query: 984 GWGXGXXEXXGGXEGXXGXGGXGVXGXLXGXXXYXXGGG 868
G+G G GG G G GG G G G GGG
Sbjct: 131 GYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGG 169
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 28.7 bits (61), Expect = 7.4
Identities = 15/55 (27%), Positives = 18/55 (32%)
Frame = +2
Query: 533 PGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697
PG + PP P G P P G P AP + + P P G
Sbjct: 184 PGLPGPRGPPGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPG 238
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 9.8
Identities = 17/63 (26%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Frame = +1
Query: 775 PPPSXSTXXPHPPPPXXXGXXXXXXXXXXXXPAPXXIXXXXXKXXPXSXAPXPXXP--LX 948
PPPS P PPPP P P P P P +
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 348
Query: 949 PPP 957
PPP
Sbjct: 349 PPP 351
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 28.3 bits (60), Expect = 9.8
Identities = 19/60 (31%), Positives = 22/60 (36%)
Frame = +2
Query: 518 PPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697
PP P PG R P G P P GA PP + P ++ P P P G
Sbjct: 112 PPGP-PGPPGRDGRPGAPGRPGNPGPPGRDGALLPGPP--PKPPCQKCPPGPPGPAGPPG 168
Score = 28.3 bits (60), Expect = 9.8
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 521 PHPIPGTXARKXPPXPXGXXTPPXPSTXXG 610
P P P +K PP P G PP P G
Sbjct: 145 PGPPPKPPCQKCPPGPPGPAGPPGPKGLPG 174
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 9.8
Identities = 17/63 (26%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Frame = +1
Query: 775 PPPSXSTXXPHPPPPXXXGXXXXXXXXXXXXPAPXXIXXXXXKXXPXSXAPXPXXP--LX 948
PPPS P PPPP P P P P P +
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 358
Query: 949 PPP 957
PPP
Sbjct: 359 PPP 361
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,825,578
Number of Sequences: 27780
Number of extensions: 167220
Number of successful extensions: 1698
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2824804260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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