BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP01_F_B23 (1060 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.34 AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 32 0.79 Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.8 V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 31 1.8 J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 31 1.8 Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 30 2.4 U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 3.2 U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 3.2 AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 30 3.2 AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 3.2 AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 30 3.2 AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.2 AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.2 AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.2 Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 29 5.6 Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 29 5.6 U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical pr... 29 5.6 AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 5.6 U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 7.4 U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 7.4 L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 29 7.4 AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 7.4 AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 7.4 Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 9.8 U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 9.8 U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 9.8 >U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein R04E5.8a protein. Length = 997 Score = 33.1 bits (72), Expect = 0.34 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Frame = +2 Query: 482 PXSXSXXGGNTAPPHP---IPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPX 652 P S GG++ PP P +P T + PP TPP P PP +P Sbjct: 127 PPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRR-------PPRTPPSPE 179 Query: 653 KRNP 664 RNP Sbjct: 180 PRNP 183 Score = 28.7 bits (61), Expect = 7.4 Identities = 18/60 (30%), Positives = 18/60 (30%), Gaps = 1/60 (1%) Frame = +3 Query: 558 PRXPXAXXRPPXLQPXXAXXWXXPPXGXAPPXREIPQXSXX-PPHQXAXPXQXPPPHLLS 734 P P PP P PP P R P PP P PPP L S Sbjct: 141 PPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPPRLNS 200 Score = 28.3 bits (60), Expect = 9.8 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 5/55 (9%) Frame = +2 Query: 518 PPHPIP-----GTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPS 667 PP P P G + PP P TPP S PP R P + PS Sbjct: 123 PPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPS 177 >AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical protein T22D1.2 protein. Length = 302 Score = 31.9 bits (69), Expect = 0.79 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 515 APPHPIPGTXARKXPPXPXGXXTPPXPST 601 AP + T +R+ PP P G TPP P T Sbjct: 20 APRFSVGETASRRPPPPPKGTGTPPPPPT 48 Score = 30.7 bits (66), Expect = 1.8 Identities = 19/61 (31%), Positives = 21/61 (34%) Frame = +2 Query: 536 GTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXGXTPTXX 715 G +R+ PP P G TPP P T R P P PT P P Sbjct: 183 GNASRRPPPPPKGTGTPPPPPTGEPQDLSAEGYASRRPPP-PPKGTGSPTPPPTGEPQDL 241 Query: 716 S 718 S Sbjct: 242 S 242 Score = 30.3 bits (65), Expect = 2.4 Identities = 16/54 (29%), Positives = 18/54 (33%) Frame = +2 Query: 536 GTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697 G +R+ PP P G TPP P T R P P P G Sbjct: 90 GNASRRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTG 143 Score = 29.9 bits (64), Expect = 3.2 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +2 Query: 536 GTXARKXPPXPXGXXTPPXPST 601 G +R+ PP P G TPP P T Sbjct: 58 GNASRRPPPPPKGTGTPPPPPT 79 Score = 29.5 bits (63), Expect = 4.2 Identities = 15/54 (27%), Positives = 18/54 (33%) Frame = +2 Query: 536 GTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697 G +R+ PP P G +PP P T R P P P G Sbjct: 152 GNASRRPPPPPKGTGSPPPPPTGEPQDLSTEGNASRRPPPPPKGTGTPPPPPTG 205 Score = 29.5 bits (63), Expect = 4.2 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 6/46 (13%) Frame = +2 Query: 482 PXSXSXXGGNTAPPHPIP------GTXARKXPPXPXGXXTPPXPST 601 P G T PP P G +R+ PP P G +PP P T Sbjct: 221 PPPPKGTGSPTPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPT 266 Score = 28.7 bits (61), Expect = 7.4 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +2 Query: 536 GTXARKXPPXPXGXXTPPXPS 598 G +R+ PP P G TPP P+ Sbjct: 276 GNASRRPPPPPKGTGTPPPPT 296 >Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical protein F23H12.4 protein. Length = 301 Score = 30.7 bits (66), Expect = 1.8 Identities = 16/55 (29%), Positives = 20/55 (36%) Frame = +2 Query: 533 PGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697 PG+ + PP P G P P+ G P AP + S P P G Sbjct: 182 PGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPG 236 >V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caenorhabditis elegansgene Col-1 coding for a collagen. ). Length = 296 Score = 30.7 bits (66), Expect = 1.8 Identities = 16/55 (29%), Positives = 20/55 (36%) Frame = +2 Query: 533 PGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697 PG+ + PP P G P P+ G P AP + S P P G Sbjct: 177 PGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPG 231 Score = 29.1 bits (62), Expect = 5.6 Identities = 16/48 (33%), Positives = 16/48 (33%) Frame = +2 Query: 506 GNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAP 649 G PP P PG PP P G P P GA P P Sbjct: 222 GPPGPPGP-PGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPPGP 268 >J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.elegans (nematode)collagen 1 (col-1) gene, complete cds. ). Length = 296 Score = 30.7 bits (66), Expect = 1.8 Identities = 16/55 (29%), Positives = 20/55 (36%) Frame = +2 Query: 533 PGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697 PG+ + PP P G P P+ G P AP + S P P G Sbjct: 177 PGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPG 231 Score = 29.1 bits (62), Expect = 5.6 Identities = 16/48 (33%), Positives = 16/48 (33%) Frame = +2 Query: 506 GNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAP 649 G PP P PG PP P G P P GA P P Sbjct: 222 GPPGPPGP-PGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPPGP 268 >Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical protein T21B4.2 protein. Length = 312 Score = 30.3 bits (65), Expect = 2.4 Identities = 14/53 (26%), Positives = 18/53 (33%) Frame = +2 Query: 506 GNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNP 664 GN P + ++ PP P G PP P+ G P P P Sbjct: 223 GNPGAPGAVTEVPGQQGPPGPPGPAGPPGPAGNAGQAGYAQPGPAGPPGDAGP 275 >U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect protein 1, isoformb protein. Length = 1437 Score = 29.9 bits (64), Expect = 3.2 Identities = 16/61 (26%), Positives = 17/61 (27%) Frame = +1 Query: 775 PPPSXSTXXPHPPPPXXXGXXXXXXXXXXXXPAPXXIXXXXXKXXPXSXAPXPXXPLXPP 954 PPP PPPP G P P + P P P PP Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774 Query: 955 P 957 P Sbjct: 775 P 775 Score = 29.5 bits (63), Expect = 4.2 Identities = 18/65 (27%), Positives = 20/65 (30%), Gaps = 2/65 (3%) Frame = +2 Query: 482 PXSXSXXGGNTAPPHPIPGTXARKXPPXPXGXXT--PPXPSTXXGAXXXVPPXXXRAPXK 655 P G PP P PG PP P G PP P P P K Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPK 807 Query: 656 RNPSI 670 + P + Sbjct: 808 KVPKV 812 Score = 29.1 bits (62), Expect = 5.6 Identities = 16/52 (30%), Positives = 16/52 (30%) Frame = +3 Query: 567 PXAXXRPPXLQPXXAXXWXXPPXGXAPPXREIPQXSXXPPHQXAXPXQXPPP 722 P P L P PP G PP P PP P PPP Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777 >U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect protein 1, isoforma protein. Length = 1435 Score = 29.9 bits (64), Expect = 3.2 Identities = 16/61 (26%), Positives = 17/61 (27%) Frame = +1 Query: 775 PPPSXSTXXPHPPPPXXXGXXXXXXXXXXXXPAPXXIXXXXXKXXPXSXAPXPXXPLXPP 954 PPP PPPP G P P + P P P PP Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774 Query: 955 P 957 P Sbjct: 775 P 775 Score = 29.5 bits (63), Expect = 4.2 Identities = 18/65 (27%), Positives = 20/65 (30%), Gaps = 2/65 (3%) Frame = +2 Query: 482 PXSXSXXGGNTAPPHPIPGTXARKXPPXPXGXXT--PPXPSTXXGAXXXVPPXXXRAPXK 655 P G PP P PG PP P G PP P P P K Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPK 807 Query: 656 RNPSI 670 + P + Sbjct: 808 KVPKV 812 Score = 29.1 bits (62), Expect = 5.6 Identities = 16/52 (30%), Positives = 16/52 (30%) Frame = +3 Query: 567 PXAXXRPPXLQPXXAXXWXXPPXGXAPPXREIPQXSXXPPHQXAXPXQXPPP 722 P P L P PP G PP P PP P PPP Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777 >AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical protein Y53C10A.10 protein. Length = 1582 Score = 29.9 bits (64), Expect = 3.2 Identities = 22/85 (25%), Positives = 28/85 (32%), Gaps = 4/85 (4%) Frame = +2 Query: 476 TDPXSXSXXGGNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVP----PXXXR 643 T + S G PP P+P + P G +P PS P P Sbjct: 913 TTSSTESFTRGGFIPPIPVPNPIPKPNPGPGPGPPSPNGPSDPNKPSPNGPSPNGPNGPS 972 Query: 644 APXKRNPSIXQXPTXPXGXTPTXXS 718 P K PS P+ P +P S Sbjct: 973 DPNKPGPSGPNGPSDPNKPSPNGPS 997 >AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. Length = 1018 Score = 29.9 bits (64), Expect = 3.2 Identities = 16/61 (26%), Positives = 17/61 (27%) Frame = +1 Query: 775 PPPSXSTXXPHPPPPXXXGXXXXXXXXXXXXPAPXXIXXXXXKXXPXSXAPXPXXPLXPP 954 PPP PPPP G P P + P P P PP Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357 Query: 955 P 957 P Sbjct: 358 P 358 Score = 29.5 bits (63), Expect = 4.2 Identities = 18/65 (27%), Positives = 20/65 (30%), Gaps = 2/65 (3%) Frame = +2 Query: 482 PXSXSXXGGNTAPPHPIPGTXARKXPPXPXGXXT--PPXPSTXXGAXXXVPPXXXRAPXK 655 P G PP P PG PP P G PP P P P K Sbjct: 331 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPK 390 Query: 656 RNPSI 670 + P + Sbjct: 391 KVPKV 395 Score = 29.1 bits (62), Expect = 5.6 Identities = 16/52 (30%), Positives = 16/52 (30%) Frame = +3 Query: 567 PXAXXRPPXLQPXXAXXWXXPPXGXAPPXREIPQXSXXPPHQXAXPXQXPPP 722 P P L P PP G PP P PP P PPP Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360 >AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein 68 protein. Length = 329 Score = 29.9 bits (64), Expect = 3.2 Identities = 22/75 (29%), Positives = 23/75 (30%), Gaps = 3/75 (4%) Frame = +2 Query: 482 PXSXSXXGGNTAPPHP-IPGTXARKXPPXPXGXXTPPXPSTXXG--AXXXVPPXXXRAPX 652 P G N P P PG A PP P G PP G VP P Sbjct: 194 PGKQGPKGPNGEPGAPGTPGGNALPGPPGPPGPQGPPGADGLPGNPGAPGVPGQVIEVPG 253 Query: 653 KRNPSIXQXPTXPXG 697 P+ P P G Sbjct: 254 TPGPAGPPGPPGPIG 268 >AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform b protein. Length = 518 Score = 29.5 bits (63), Expect = 4.2 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Frame = +2 Query: 506 GNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPT 685 G+ PP P G+ P P +PP T PP R +R+P PT Sbjct: 295 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGT---GSPPPPPRQKRQAPERSPPTGSPPT 351 Query: 686 --XPXGXTP 706 P G P Sbjct: 352 GSPPTGRPP 360 Score = 29.1 bits (62), Expect = 5.6 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = +2 Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985 PPP + P +P PP P S PP + P P P Sbjct: 264 PPPPRTGSPPPPPTGSP-PPPPAGGSPPPPRAGSPPPPP 301 Score = 28.3 bits (60), Expect = 9.8 Identities = 14/39 (35%), Positives = 16/39 (41%) Frame = +2 Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985 PPP P +P PP P S PP + P P P Sbjct: 239 PPPPPKGSPPLAGSGSPPPP-PAAGSPPPPRTGSPPPPP 276 Score = 28.3 bits (60), Expect = 9.8 Identities = 13/38 (34%), Positives = 14/38 (36%) Frame = +2 Query: 872 PPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985 PP P P PP P S PP + P P P Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284 >AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform c protein. Length = 539 Score = 29.5 bits (63), Expect = 4.2 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Frame = +2 Query: 506 GNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPT 685 G+ PP P G+ P P +PP T PP R +R+P PT Sbjct: 316 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGT---GSPPPPPRQKRQAPERSPPTGSPPT 372 Query: 686 --XPXGXTP 706 P G P Sbjct: 373 GSPPTGRPP 381 Score = 29.1 bits (62), Expect = 5.6 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = +2 Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985 PPP + P +P PP P S PP + P P P Sbjct: 285 PPPPRTGSPPPPPTGSP-PPPPAGGSPPPPRAGSPPPPP 322 Score = 28.3 bits (60), Expect = 9.8 Identities = 14/39 (35%), Positives = 16/39 (41%) Frame = +2 Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985 PPP P +P PP P S PP + P P P Sbjct: 260 PPPPPKGSPPLAGSGSPPPP-PAAGSPPPPRTGSPPPPP 297 Score = 28.3 bits (60), Expect = 9.8 Identities = 13/38 (34%), Positives = 14/38 (36%) Frame = +2 Query: 872 PPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985 PP P P PP P S PP + P P P Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305 >AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 75, isoform a protein. Length = 524 Score = 29.5 bits (63), Expect = 4.2 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Frame = +2 Query: 506 GNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPT 685 G+ PP P G+ P P +PP T PP R +R+P PT Sbjct: 301 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGT---GSPPPPPRQKRQAPERSPPTGSPPT 357 Query: 686 --XPXGXTP 706 P G P Sbjct: 358 GSPPTGRPP 366 Score = 29.1 bits (62), Expect = 5.6 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = +2 Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985 PPP + P +P PP P S PP + P P P Sbjct: 270 PPPPRTGSPPPPPTGSP-PPPPAGGSPPPPRAGSPPPPP 307 Score = 28.3 bits (60), Expect = 9.8 Identities = 14/39 (35%), Positives = 16/39 (41%) Frame = +2 Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985 PPP P +P PP P S PP + P P P Sbjct: 245 PPPPPKGSPPLAGSGSPPPP-PAAGSPPPPRTGSPPPPP 282 Score = 28.3 bits (60), Expect = 9.8 Identities = 13/38 (34%), Positives = 14/38 (36%) Frame = +2 Query: 872 PPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXPXP 985 PP P P PP P S PP + P P P Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290 >Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical protein Y41E3.2 protein. Length = 289 Score = 29.1 bits (62), Expect = 5.6 Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 1/71 (1%) Frame = +2 Query: 482 PXSXSXXGGNTAPPHPIP-GTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKR 658 P G N P P G A P P G PP P GA P +P K Sbjct: 146 PGQPGIPGDNGPPGEQGPKGPDAAPGEPGPKGPIGPPGPPGQAGA-----PGEPGSPAKS 200 Query: 659 NPSIXQXPTXP 691 P++ P P Sbjct: 201 EPAVPGPPGPP 211 >Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical protein F47B8.14 protein. Length = 255 Score = 29.1 bits (62), Expect = 5.6 Identities = 13/36 (36%), Positives = 15/36 (41%) Frame = +2 Query: 503 GGNTAPPHPIPGTXARKXPPXPXGXXTPPXPSTXXG 610 GG+ APP P P A P P P P+ G Sbjct: 36 GGDAAPPPPPPADAAPAPAPAPEPEAAPAAPAADAG 71 >U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical protein F26A1.11 protein. Length = 239 Score = 29.1 bits (62), Expect = 5.6 Identities = 12/30 (40%), Positives = 12/30 (40%) Frame = +2 Query: 902 RXPXTPXPPXPXXPSXPPXXSXXPXPXPXQ 991 R P P PP P P PP P P Q Sbjct: 32 RPPRPPRPPSPSRPQRPPPSRPQRPPPPRQ 61 >AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical protein F59E12.9 protein. Length = 1621 Score = 29.1 bits (62), Expect = 5.6 Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 3/47 (6%) Frame = +2 Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXP---SXPPXXSXXPXPXPXQLXS 1000 PPP P TP PP P P S P P P P L S Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPPLFS 1384 >U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein 43 protein. Length = 303 Score = 28.7 bits (61), Expect = 7.4 Identities = 15/55 (27%), Positives = 18/55 (32%) Frame = +2 Query: 533 PGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697 PG + PP P G P P G P AP + + P P G Sbjct: 184 PGLPGPRGPPGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPG 238 >U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd related) protein 4 protein. Length = 210 Score = 28.7 bits (61), Expect = 7.4 Identities = 14/37 (37%), Positives = 14/37 (37%) Frame = +2 Query: 869 PPPXK*XXXPXRXPXTPXPPXPXXPSXPPXXSXXPXP 979 PPP P P PP P PS P S P P Sbjct: 58 PPPMCPPPPPPPPPPMCPPPPPPMPSYSPCQSYAPAP 94 Score = 28.3 bits (60), Expect = 9.8 Identities = 15/46 (32%), Positives = 15/46 (32%) Frame = +3 Query: 585 PPXLQPXXAXXWXXPPXGXAPPXREIPQXSXXPPHQXAXPXQXPPP 722 PP P PP PP PQ PP P PPP Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPP 72 >L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family protein 1, isoform d protein. Length = 759 Score = 28.7 bits (61), Expect = 7.4 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = -2 Query: 984 GWGXGXXEXXGGXEGXXGXGGXGVXGXLXGXXXYXXGGG 868 G+G G GG G G GG G L G GGG Sbjct: 65 GFGGGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGGGGG 103 >AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical protein T20B6.3 protein. Length = 259 Score = 28.7 bits (61), Expect = 7.4 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = -2 Query: 984 GWGXGXXEXXGGXEGXXGXGGXGVXGXLXGXXXYXXGGG 868 G+G G GG G G GG G G G GGG Sbjct: 131 GYGGGGYGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGG 169 >AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen protein. Length = 303 Score = 28.7 bits (61), Expect = 7.4 Identities = 15/55 (27%), Positives = 18/55 (32%) Frame = +2 Query: 533 PGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697 PG + PP P G P P G P AP + + P P G Sbjct: 184 PGLPGPRGPPGPPGEAGQPGPQGDAGTPAQSEPLTPGAPGEAGDAGPAGPPGPPG 238 >Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein C08B11.5 protein. Length = 388 Score = 28.3 bits (60), Expect = 9.8 Identities = 17/63 (26%), Positives = 18/63 (28%), Gaps = 2/63 (3%) Frame = +1 Query: 775 PPPSXSTXXPHPPPPXXXGXXXXXXXXXXXXPAPXXIXXXXXKXXPXSXAPXPXXP--LX 948 PPPS P PPPP P P P P P + Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 348 Query: 949 PPP 957 PPP Sbjct: 349 PPP 351 >U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter than wild-typeprotein 3 protein. Length = 302 Score = 28.3 bits (60), Expect = 9.8 Identities = 19/60 (31%), Positives = 22/60 (36%) Frame = +2 Query: 518 PPHPIPGTXARKXPPXPXGXXTPPXPSTXXGAXXXVPPXXXRAPXKRNPSIXQXPTXPXG 697 PP P PG R P G P P GA PP + P ++ P P P G Sbjct: 112 PPGP-PGPPGRDGRPGAPGRPGNPGPPGRDGALLPGPP--PKPPCQKCPPGPPGPAGPPG 168 Score = 28.3 bits (60), Expect = 9.8 Identities = 12/30 (40%), Positives = 13/30 (43%) Frame = +2 Query: 521 PHPIPGTXARKXPPXPXGXXTPPXPSTXXG 610 P P P +K PP P G PP P G Sbjct: 145 PGPPPKPPCQKCPPGPPGPAGPPGPKGLPG 174 >U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding protein protein. Length = 398 Score = 28.3 bits (60), Expect = 9.8 Identities = 17/63 (26%), Positives = 18/63 (28%), Gaps = 2/63 (3%) Frame = +1 Query: 775 PPPSXSTXXPHPPPPXXXGXXXXXXXXXXXXPAPXXIXXXXXKXXPXSXAPXPXXP--LX 948 PPPS P PPPP P P P P P + Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMP 358 Query: 949 PPP 957 PPP Sbjct: 359 PPP 361 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,825,578 Number of Sequences: 27780 Number of extensions: 167220 Number of successful extensions: 1698 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 590 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1456 length of database: 12,740,198 effective HSP length: 82 effective length of database: 10,462,238 effective search space used: 2824804260 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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