Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B21
(930 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical ... 67 1e-11
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 36 0.031
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 35 0.072
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 32 0.67
Z93389-4|CAE17923.1| 324|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.1
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 25 4.4
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 6.3
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 28 8.3
U41546-6|AAC48223.1| 798|Caenorhabditis elegans Hypothetical pr... 28 8.3
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 28 8.3
U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical pr... 28 8.3
>AF039052-5|AAF98626.2| 586|Caenorhabditis elegans Hypothetical
protein T22D1.4 protein.
Length = 586
Score = 67.3 bits (157), Expect = 1e-11
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Frame = +1
Query: 181 KLKNVDRTVDISTQLVKVVSKIVLENSGKSPVKHFLFAVEEAAKNNLAFIGAKDSNSK-D 357
K NVDRT+D ++Q+VKV + EN G P L A+ + L+FI A SK
Sbjct: 20 KAANVDRTIDATSQIVKVSTLYSFENVGNGPQSKVLIALSKEESATLSFISAGIDGSKGK 79
Query: 358 LRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDXLVKY 537
L+++E + + + V+L+ P+ GA V + + T+ L+P P+ I Q + V
Sbjct: 80 LKISEKPAE--KDLAVYEVDLRTPVAKGAKVTIRINLRITQVLEPLPSKIQQSDSQFV-- 135
Query: 538 VGNLYTYSPVLY 573
V + Y P LY
Sbjct: 136 VLHTSAYVPSLY 147
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 36.3 bits (80), Expect = 0.031
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +3
Query: 606 PXLXNPXPX*SPXPQLXXPLIFXPPPPXCXPXPXEXXPXXSLXKPXPP 749
P + P P P P + P F PPPP C P P P + P PP
Sbjct: 35 PPMCAPPPLPCPPPPICPPQ-FCPPPPMCPPPP--PPPPPPMCPPPPP 79
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +3
Query: 639 PXPQLXXPLIFXPPPPXCXPXPXEXXPXXSLXKPXPP 749
P P P + PPPP C P P P PP
Sbjct: 34 PPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPP 70
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +3
Query: 561 PGTIPPHXKPVXF*IPXLXNPXPX*SPXPQLXXPLIFXPPPPXCXPXP 704
P PP P P P P P + P PPPP C P P
Sbjct: 31 PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPP 78
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/62 (32%), Positives = 22/62 (35%)
Frame = +3
Query: 561 PGTIPPHXKPVXF*IPXLXNPXPX*SPXPQLXXPLIFXPPPPXCXPXPXEXXPXXSLXKP 740
P PP P+ P L P P P PQ P PPPP P P P +
Sbjct: 27 PPPCPPPPPPMCA-PPPLPCPPPPICP-PQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSY 84
Query: 741 XP 746
P
Sbjct: 85 SP 86
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 35.1 bits (77), Expect = 0.072
Identities = 29/100 (29%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
Frame = +3
Query: 411 CGAQGTPKRRCHS-KCCCRNCVHQSFTTISD-SYN--SARRPVGEICWQFVYILPGTIPP 578
CG G + C CC N Q F + + +N A RP C Y+ P +PP
Sbjct: 35 CGYNGCGRSVCQECPSCCGNDGPQPFNPVFNIHFNCCGAPRPSPSCC---PYVPPAPLPP 91
Query: 579 HXKPVXF*IPXLXNPXPX*SPXPQLXXPLIFXPPPPXCXP 698
P P P P P P PPPP P
Sbjct: 92 PPPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPPPPTPSP 131
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 31.9 bits (69), Expect = 0.67
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = +3
Query: 621 PXPX*SPXPQLXXPLIFXPPPPXCXPXPXEXXPXXSLXKPXP 746
P P P P P F PPPP C P P P P P
Sbjct: 50 PMPVCPPPPPC--PAQFCPPPPICPPPPPPPMPCPPPPPPMP 89
>Z93389-4|CAE17923.1| 324|Caenorhabditis elegans Hypothetical
protein T13F3.7 protein.
Length = 324
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 254 SKTIFDTTFTSWVDISTVRSTFFNFISLDIVSTLALRVCIVKKQYE 117
S I DT F S IST + + +L + T L++CI +K+YE
Sbjct: 136 STKIIDTVFRSIFPISTTFAVGCSVSALHSIVTNILKICIRQKKYE 181
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +1
Query: 859 PPPRAPXXXXSPXPPXPPXRXPA 927
PPPR P PP PP R PA
Sbjct: 351 PPPRYPSAGPGMYPPPPPSRPPA 373
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Frame = +3
Query: 558 LPGTIPPHXKPVXF*IPXLXNPXPX*SPXPQLXXPLIFXPPPPXCXPX--PXEXXPXXSL 731
+PG +PP P F P + P P P + P PPPP P P P
Sbjct: 313 MPG-MPPPPPPSRFGPPGMGGMPPP--PPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPS 369
Query: 732 XKPXPP 749
P PP
Sbjct: 370 RPPAPP 375
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +1
Query: 859 PPPRAPXXXXSPXPPXPPXRXPA 927
PPPR P PP PP R PA
Sbjct: 361 PPPRYPSAGPGMYPPPPPSRPPA 383
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Frame = +3
Query: 558 LPGTIPPHXKPVXF*IPXLXNPXPX*SPXPQLXXPLIFXPPPPXCXPX--PXEXXPXXSL 731
+PG +PP P F P + P P P + P PPPP P P P
Sbjct: 323 MPG-MPPPPPPSRFGPPGMGGMPPP--PPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPS 379
Query: 732 XKPXPP 749
P PP
Sbjct: 380 RPPAPP 385
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 24.6 bits (51), Expect(2) = 4.4
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +3
Query: 675 PPPPXCXPXPXEXXPXXSLXKPXPP 749
PPP C P P P P PP
Sbjct: 28 PPPQCCGPPPACGNPCGGGFGPPPP 52
Score = 23.4 bits (48), Expect(2) = 4.4
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +3
Query: 858 PPPKGPXXXXFPXPPXSSXXGP 923
PPP GP P PP + P
Sbjct: 51 PPPFGPVGYALPPPPPNGYALP 72
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 844 PYXXXPPPRAPXXXXSPXPPXPPXRXPA 927
PY PPP P P PP P PA
Sbjct: 127 PYQQQPPPPPPPPHYPPPPPHYPPPPPA 154
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 28.3 bits (60), Expect = 8.3
Identities = 27/107 (25%), Positives = 31/107 (28%), Gaps = 6/107 (5%)
Frame = +3
Query: 621 PXPX*SPXPQLXXPLIFXPPPPXCX----PXPXEXXPXXSLXKPXPPFLTXXXXXKRXTX 788
P P P P + P+ PPPP P P P + PP
Sbjct: 116 PFPQHFPFPGMP-PMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPAPAPGVY 174
Query: 789 XXP--LXG*YCPXNXVXXX*PXXGXPPPKGPXXXXFPXPPXSSXXGP 923
P + G Y P P G P P P F P GP
Sbjct: 175 MPPPGMPGAYPPPRMPIGHGPPGGPPMPGPPQRSRFDQPDGGDRWGP 221
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 28.3 bits (60), Expect = 8.3
Identities = 27/107 (25%), Positives = 31/107 (28%), Gaps = 6/107 (5%)
Frame = +3
Query: 621 PXPX*SPXPQLXXPLIFXPPPPXCX----PXPXEXXPXXSLXKPXPPFLTXXXXXKRXTX 788
P P P P + P+ PPPP P P P + PP
Sbjct: 116 PFPQHFPFPGMP-PMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYPPPRGYPPAPAPGVY 174
Query: 789 XXP--LXG*YCPXNXVXXX*PXXGXPPPKGPXXXXFPXPPXSSXXGP 923
P + G Y P P G P P P F P GP
Sbjct: 175 MPPPGMPGAYPPPRMPIGHGPPGGPPMPGPPQRSRFDQPDGGDRWGP 221
>U41546-6|AAC48223.1| 798|Caenorhabditis elegans Hypothetical
protein T25B6.2 protein.
Length = 798
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 205 VDISTQLVKVVSKIVLENSGKSPVKHFLFAVEEAAKNNLA 324
VD+ +++V +SKI + ++ S + A E KNNLA
Sbjct: 119 VDVYSEIVAALSKIDVTSTTTSKTERITKAAFETCKNNLA 158
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = +3
Query: 576 PHXKPVXF*IPXLXNPXPX*SPXPQLXXPLIFXPPPPXCXPXPXEXXPXXSLXKPXP 746
P KP+ F P + P P P P P++F P P P P KP P
Sbjct: 206 PIPKPMPFPKP-MPKPMPKHKPKP-FPKPMLFPKPMPIPKPMPFPKPMPKPKPKPKP 260
>U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical
protein F13H8.5 protein.
Length = 513
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 603 IPXLXNPXPX*SPXPQLXXPLIFXPPPP 686
I L P P +P Q PLI PPPP
Sbjct: 210 ITLLAQPPPPPAPPAQTQAPLIRVPPPP 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,413,931
Number of Sequences: 27780
Number of extensions: 387141
Number of successful extensions: 1598
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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