Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B20
         (1133 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.52 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.90 

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = +1

Query: 796  PRRSTLXXXPPPLXPPXPPNXLPXPRXPLXXXPXXXXPPXRPXXP 930
            P+ S     PPP+  P PP+  P P  P    P        P  P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
 Frame = +1

Query: 790  PXPRRSTLXXXPPPLXPPXP--PNXLPXPRXPLXXXPXXXXPPXR 918
            P P    +   PPP  PP P  P   P P  P    P    P  R
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = +1

Query: 799 RRSTLXXXPPPLXPPXPPNXLPXPRXPLXXXPXXXXPPXRPXXPXXXP 942
           R ST     PP  PP  P  LP    P         PP  P  P   P
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 17/60 (28%), Positives = 19/60 (31%)
 Frame = +1

Query: 790 PXPRRSTLXXXPPPLXPPXPPNXLPXPRXPLXXXPXXXXPPXRPXXPXXXPTVTTXXPXS 969
           P P  S+     PP  PP  P        PL        PP  P  P   P+     P S
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV-PTPPSLPPSAPPSLPPS 434



 Score = 26.2 bits (55), Expect = 8.4
 Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
 Frame = +1

Query: 790 PXPRRSTLXXXPPPLXPPXPPNXLP--XPRXPLXXXPXXXXPPXRPXXPXXXPTVTTXXP 963
           P P   +L    PP  PP  P  LP   P  P    P     P  P  P   P      P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP----PLPPSAPIAPPLPAGMPAAPPLPP 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,076
Number of Sequences: 5004
Number of extensions: 14193
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 603631146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)