Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B20
(1133 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 35 0.092
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 35 0.092
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 35 0.092
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 27 0.80
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 32 0.86
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 32 0.86
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 1.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 1.1
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 1.5
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 31 1.5
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 31 1.5
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 30 3.5
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.6
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.1
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 6.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.1
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 6.1
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 6.1
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 6.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 8.0
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 35.1 bits (77), Expect = 0.092
Identities = 18/63 (28%), Positives = 22/63 (34%)
Frame = +1
Query: 787 MPXPRRSTLXXXPPPLXPPXPPNXLPXPRXPLXXXPXXXXPPXRPXXPXXXPTVTTXXPX 966
MP P PPP+ P PP +P P L P PP P + P
Sbjct: 82 MPPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPP 141
Query: 967 SQS 975
+ S
Sbjct: 142 TSS 144
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 35.1 bits (77), Expect = 0.092
Identities = 18/63 (28%), Positives = 22/63 (34%)
Frame = +1
Query: 787 MPXPRRSTLXXXPPPLXPPXPPNXLPXPRXPLXXXPXXXXPPXRPXXPXXXPTVTTXXPX 966
MP P PPP+ P PP +P P L P PP P + P
Sbjct: 105 MPPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPP 164
Query: 967 SQS 975
+ S
Sbjct: 165 TSS 167
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 35.1 bits (77), Expect = 0.092
Identities = 18/63 (28%), Positives = 22/63 (34%)
Frame = +1
Query: 787 MPXPRRSTLXXXPPPLXPPXPPNXLPXPRXPLXXXPXXXXPPXRPXXPXXXPTVTTXXPX 966
MP P PPP+ P PP +P P L P PP P + P
Sbjct: 355 MPPPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPP 414
Query: 967 SQS 975
+ S
Sbjct: 415 TSS 417
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical protein
T23F1.5 protein.
Length = 1262
Score = 26.6 bits (56), Expect(2) = 0.80
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +3
Query: 1014 TXPPPSXXXPPTXXXXC-PPXTLVSXHXXPPP 1106
T PP PP PP +L+ H PPP
Sbjct: 565 TVPPGKQPFPPFGEGPATPPRSLIPAHNFPPP 596
Score = 23.8 bits (49), Expect(2) = 0.80
Identities = 11/34 (32%), Positives = 11/34 (32%)
Frame = +3
Query: 819 PAPPXXPPNXXKXPPPXXXPXXXXPXRXXPPXSP 920
PAPP P PPP P P P
Sbjct: 539 PAPPLINPYIPPPPPPHPEEEYATPYTVPPGKQP 572
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.9 bits (69), Expect = 0.86
Identities = 17/58 (29%), Positives = 20/58 (34%)
Frame = +1
Query: 790 PXPRRSTLXXXPPPLXPPXPPNXLPXPRXPLXXXPXXXXPPXRPXXPXXXPTVTTXXP 963
P PR+S PP PP P PR P P P + P P+ P
Sbjct: 126 PPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNP 183
Score = 29.5 bits (63), Expect = 4.6
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +1
Query: 751 PXDXXPTXXXXFMPXPRRSTLXXXPPPLXPPXPPNXLPXPRXPLXXXPXXXXPP 912
P P P PRR + P PP P P PR P P PP
Sbjct: 142 PPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTP-PSPEPRNPPRTPPSPIPPP 194
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.9 bits (69), Expect = 0.86
Identities = 18/58 (31%), Positives = 20/58 (34%)
Frame = +1
Query: 790 PXPRRSTLXXXPPPLXPPXPPNXLPXPRXPLXXXPXXXXPPXRPXXPXXXPTVTTXXP 963
P P PPPL P PP P P P PP P P P + + P
Sbjct: 29 PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSP 86
Score = 31.1 bits (67), Expect = 1.5
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Frame = +1
Query: 823 PPPLXPPXP----PNXLPXPRXPLXXXPXXXXPPXRPXXPXXXP 942
PPP PP P P LP P P+ PP P P P
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPP 70
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 8.0
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 810 SXXPAPPXXPPNXXKXPPPXXXPXXXXPXRXXPPXSPXXXPXA 938
S P PP PP PPP P PP P A
Sbjct: 755 SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMA 797
Score = 27.9 bits (59), Expect(2) = 1.0
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 819 PAPPXXPPNXXKXPPPXXXPXXXXPXRXXPPXSP 920
P PP PP PPP P P PP P
Sbjct: 714 PPPPGLPP-ITGGPPPPPPPGGLPPITGGPPPPP 746
Score = 22.2 bits (45), Expect(2) = 1.0
Identities = 10/29 (34%), Positives = 10/29 (34%)
Frame = +3
Query: 1020 PPPSXXXPPTXXXXCPPXTLVSXHXXPPP 1106
PPP PP PP PPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 8.0
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 810 SXXPAPPXXPPNXXKXPPPXXXPXXXXPXRXXPPXSPXXXPXA 938
S P PP PP PPP P PP P A
Sbjct: 338 SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMA 380
Score = 27.9 bits (59), Expect(2) = 1.1
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 819 PAPPXXPPNXXKXPPPXXXPXXXXPXRXXPPXSP 920
P PP PP PPP P P PP P
Sbjct: 297 PPPPGLPP-ITGGPPPPPPPGGLPPITGGPPPPP 329
Score = 22.2 bits (45), Expect(2) = 1.1
Identities = 10/29 (34%), Positives = 10/29 (34%)
Frame = +3
Query: 1020 PPPSXXXPPTXXXXCPPXTLVSXHXXPPP 1106
PPP PP PP PPP
Sbjct: 328 PPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.1 bits (67), Expect = 1.5
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Frame = +1
Query: 790 PXPRRSTLXXXPPPLXPPXPPNXLPXPRXPLXXXPXXXXP-PXRPXXPXXXPTVTTXXP 963
P P+++ PPP P P + +P P PL P P P P P V P
Sbjct: 56 PYPQQAVPAPAPPPA--PYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAP 112
Score = 30.7 bits (66), Expect = 2.0
Identities = 22/87 (25%), Positives = 28/87 (32%)
Frame = +1
Query: 751 PXDXXPTXXXXFMPXPRRSTLXXXPPPLXPPXPPNXLPXPRXPLXXXPXXXXPPXRPXXP 930
P + P P P+ + PPP P P + +P P P PP P P
Sbjct: 88 PQNAVPVPAPPPAPYPQHAVPAPAPPPA--PYPQHAVPAPAPYQQQPPPPPPPPHYPPPP 145
Query: 931 XXXPTVTTXXPXSQSXXXXXXRXPRPA 1011
P P + PRPA
Sbjct: 146 PHYP----PPPPAPHSAYIDHSAPRPA 168
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 31.1 bits (67), Expect = 1.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 790 PXPRRSTLXXXPPPLXPPXPPNXLPXPRXP 879
P P PPP+ PP PP +P P P
Sbjct: 56 PPPPCPAQFCPPPPICPPPPPPPMPCPPPP 85
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 31.1 bits (67), Expect = 1.5
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +1
Query: 823 PPPLXPPXPPNXLPXPRXPLXXXPXXXXPPXRPXXP 930
PPP PP P N P P P PP P P
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPP 596
Score = 29.9 bits (64), Expect = 3.5
Identities = 17/62 (27%), Positives = 19/62 (30%)
Frame = +3
Query: 735 PXPKSXSGPXXHXXXXIHATXXAIHSXXPAPPXXPPNXXKXPPPXXXPXXXXPXRXXPPX 914
P P S P + A + P PP P N PPP P PP
Sbjct: 535 PPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPP 594
Query: 915 SP 920
P
Sbjct: 595 PP 596
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 29.9 bits (64), Expect = 3.5
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 790 PXPRRSTLXXXPPPLXPPXPPNXLPXPRXPL 882
P P S L PPP PP PP P P+
Sbjct: 73 PPPLISILQQAPPPPPPPPPPTLKAPPPPPI 103
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 4.6
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -2
Query: 931 GXXXGXWGGXXRXGXXXXGXXXGGGCLXXLGGXXGGAG 818
G G GG G G GGGC GG GG G
Sbjct: 124 GGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGGG 161
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 4.6
Identities = 26/96 (27%), Positives = 26/96 (27%)
Frame = -2
Query: 1105 GGGXXCXETRVXGGQXXXXVGGXXXXGGGXVXRXEEXGXRXRXXIASXAXXW*RLXAXGX 926
GGG C G GG GGG G G
Sbjct: 43 GGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGG 102
Query: 925 XXGXWGGXXRXGXXXXGXXXGGGCLXXLGGXXGGAG 818
G GG G G GGGC GG GG G
Sbjct: 103 CGGGGGGCGGGGGGCGGG--GGGCGGGGGGCGGGGG 136
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 4.6
Identities = 26/96 (27%), Positives = 26/96 (27%)
Frame = -2
Query: 1105 GGGXXCXETRVXGGQXXXXVGGXXXXGGGXVXRXEEXGXRXRXXIASXAXXW*RLXAXGX 926
GGG C G GG GGG G G
Sbjct: 43 GGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGG 102
Query: 925 XXGXWGGXXRXGXXXXGXXXGGGCLXXLGGXXGGAG 818
G GG G G GGGC GG GG G
Sbjct: 103 CGGGGGGCGGGGGGCGGG--GGGCGGGGGGCGGGGG 136
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.5 bits (63), Expect = 4.6
Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 1/72 (1%)
Frame = +1
Query: 751 PXDXXPTXXXXFMPXPRRSTLXXXPPPLXPPXPPNXLPXPR-XPLXXXPXXXXPPXRPXX 927
P PT P S+ P P PP+ +P P P PP P
Sbjct: 444 PPSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLP 503
Query: 928 PXXXPTVTTXXP 963
P P+ P
Sbjct: 504 PIATPSSVPPPP 515
Score = 29.5 bits (63), Expect = 4.6
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Frame = +1
Query: 751 PXDXXPTXXXXFMPXPRRSTLXXXPPPLXPPXPPNXLPXPRXPLXXXPXXXXPPXRPXXP 930
P P+ P P+ + + PPP PP PP P P P PP
Sbjct: 472 PAPPPPSRIPNPSPSPQPAEVSKSPPP-PPPLPPIATP-SSVPPPPPPPPPPPPALEQEI 529
Query: 931 XXXPTV-TTXXPXSQS 975
PTV T P S S
Sbjct: 530 SGPPTVRLTAVPESNS 545
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 6.1
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Frame = +1
Query: 790 PXPRRSTLXXXPPPLXPPXPPNX--------LPXPRXPLXXXPXXXXPPXRPXXPXXXPT 945
P P R+ P + PP PP+ +P P P P PP P P P
Sbjct: 302 PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPG 361
Query: 946 VTTXXPXSQ 972
+ P S+
Sbjct: 362 MYPPPPPSR 370
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.1 bits (62), Expect = 6.1
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 919 GXWGGXXRXGXXXXGXXXGGGCLXXLGGXXGGAG 818
G WGG G G GGG GG GG G
Sbjct: 79 GNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRG 112
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 6.1
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Frame = +1
Query: 790 PXPRRSTLXXXPPPLXPPXPPNX--------LPXPRXPLXXXPXXXXPPXRPXXPXXXPT 945
P P R+ P + PP PP+ +P P P P PP P P P
Sbjct: 312 PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPG 371
Query: 946 VTTXXPXSQ 972
+ P S+
Sbjct: 372 MYPPPPPSR 380
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.1 bits (62), Expect = 6.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 1079 KGXXRTXGVXGWGGXXGXGRGRXAGRG 999
+G + G WGG G GRG GRG
Sbjct: 146 RGPPGSNGGGDWGGNGGGGRGGGGGRG 172
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.1 bits (62), Expect = 6.1
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +1
Query: 784 FMPXPRRSTLXXXP-PPLXPPXPPNXLPXPRXPLXXXPXXXXP 909
FMP P P PP PP PP+ + P P P
Sbjct: 335 FMPPPHPMMFRGGPYPPFFPPPPPHFMRPSSPPTDGGPIITGP 377
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.1 bits (62), Expect = 6.1
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +1
Query: 784 FMPXPRRSTLXXXP-PPLXPPXPPNXLPXPRXPLXXXPXXXXP 909
FMP P P PP PP PP+ + P P P
Sbjct: 335 FMPPPHPMMFRGGPYPPFFPPPPPHFMRPSSPPTDGGPIITGP 377
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 8.0
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 810 SXXPAPPXXPPNXXKXPPPXXXPXXXXPXRXXPPXSPXXXPXA 938
S P PP PP PPP P PP P A
Sbjct: 755 SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMA 797
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,846,864
Number of Sequences: 27780
Number of extensions: 137800
Number of successful extensions: 1502
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3067730652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -