Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B18
         (970 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0415 - 17395988-17396161,17397349-17397444,17397489-173980...    29   5.6  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   7.4  
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080...    28   9.7  
07_01_0479 + 3606663-3607448                                           28   9.7  

>11_04_0415 -
           17395988-17396161,17397349-17397444,17397489-17398026,
           17398106-17398422
          Length = 374

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 20/52 (38%), Positives = 20/52 (38%)
 Frame = -1

Query: 637 PRGGF*XXKXIFGGXQXRGXPPGXGXGGXXPGGKXXPXGXXXFXPGGFSXXK 482
           PRGG       FGG    G P G G GG    G   P G     P GF   K
Sbjct: 8   PRGGGGGGPRGFGG----GGPRGFGGGGPRGFGGGGPRGFGGGGPRGFGGSK 55


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = +3

Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPXPGGXP 584
           PP G  P  P      G    + P       P G   P    PP P PG  P
Sbjct: 13  PPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPP 64


>11_04_0158 +
           14207463-14207629,14207724-14207774,14207874-14208002,
           14209342-14209447,14209491-14209601,14210042-14210098,
           14210903-14211727
          Length = 481

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +3

Query: 522 PXGXFXPPGXXPPXPXPGGXPLFXXPPKXF 611
           P   F  PG  PP   PG  PLF   P  F
Sbjct: 259 PPQLFNWPGHAPPQLPPGASPLFPPGPAAF 288


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 17/52 (32%), Positives = 18/52 (34%)
 Frame = +3

Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPXPGGXP 584
           PP G  P   R          + PPG     P G   PPG     P P G P
Sbjct: 169 PPPGQMPPPMRPPQMP--IPFQRPPGVPPAFPGGPPPPPGPFMRGPPPMGPP 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,399,532
Number of Sequences: 37544
Number of extensions: 341744
Number of successful extensions: 793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2811537600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)