Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B18
(970 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 30 2.5
SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 4.3
SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7) 29 5.7
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 28 9.9
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 30.3 bits (65), Expect = 2.5
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = +3
Query: 405 PXGXXFXXPPXGXXPXXPRXXFXXGXXXXENPP--GXKXXXPXGXFXPPGXXPPXPXPGG 578
P G PP G P P G +N P P G PPG P P GG
Sbjct: 192 PPGGYQQPPPGGYAPP-PYVPQEGGGIPPQNHPLTNYPAPPPQGYAPPPGGYPGAPPAGG 250
Query: 579 XP 584
P
Sbjct: 251 YP 252
>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 30.3 bits (65), Expect = 2.5
Identities = 20/58 (34%), Positives = 22/58 (37%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPXPGGXPLFXXPP 602
PP G P P G PG P G + P G PP P P G P + PP
Sbjct: 606 PPHGGHPHHPPPTGYPGGY-----PGTHTAPPAGGY-PTGQHPPPP-PAGYPGYGPPP 656
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.5 bits (63), Expect = 4.3
Identities = 21/68 (30%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Frame = +3
Query: 402 GPXGXXFXXPPXGXXPXXPRXXFXXGXXXXENPPGXKXXX-PXGXFXPPGXXPPXPXPGG 578
GP G P G P P PPG K P G PPG P GG
Sbjct: 866 GPPGQVGEMGPPGL-PGPPGPASPPSPPGPPGPPGPKGPPGPNGCLGPPGDAGPAGNTGG 924
Query: 579 XPLFXXPP 602
PP
Sbjct: 925 AGCQPAPP 932
Score = 28.7 bits (61), Expect = 7.5
Identities = 20/63 (31%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Frame = +3
Query: 402 GPXGXXFXXPPXGXXPXXPRXXFXXGXXXXENPPGXKXXX-PXGXFXPPGXXPPXPXPGG 578
GP G P G P P G PPG G PPG P PGG
Sbjct: 101 GPPGELGDMGPPGP-PGPPGPQMPPGPPGLPGPPGPAGPPGTNGELGPPGDVGPPGNPGG 159
Query: 579 XPL 587
L
Sbjct: 160 PGL 162
>SB_58802| Best HMM Match : Gag_spuma (HMM E-Value=2.7)
Length = 810
Score = 29.1 bits (62), Expect = 5.7
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 455 PPXXFFXGXFXXGKPPXGKXXXAPGXXFXPXGXTPXPXPXGXPP 586
PP G GKPP G+ G P G T G PP
Sbjct: 707 PPKGRTVGKSGEGKPPKGRTVGKSGEGKPPKGRTVGKSSEGKPP 750
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 455 PPXXFFXGXFXXGKPPXGKXXXAPGXXFXPXGXTPXPXPXGXPP 586
PP G GKPP G+ G P G T G PP
Sbjct: 637 PPKGRTVGKSSEGKPPKGRTVGKSGEGKPPKGRTVGKSGEGKPP 680
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 455 PPXXFFXGXFXXGKPPXGKXXXAPGXXFXPXGXTPXPXPXGXPP 586
PP G GKPP G+ G P G T G PP
Sbjct: 651 PPKGRTVGKSGEGKPPKGRTVGKSGEGKPPKGRTVGKSGEGKPP 694
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 455 PPXXFFXGXFXXGKPPXGKXXXAPGXXFXPXGXTPXPXPXGXPP 586
PP G GKPP G+ G P G T G PP
Sbjct: 665 PPKGRTVGKSGEGKPPKGRTVGKSGEGKPPKGRTVGKSGEGKPP 708
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 455 PPXXFFXGXFXXGKPPXGKXXXAPGXXFXPXGXTPXPXPXGXPP 586
PP G GKPP G+ G P G T G PP
Sbjct: 679 PPKGRTVGKSGEGKPPKGRTVGKSGEGKPPKGRTVGKSGEGKPP 722
Score = 28.7 bits (61), Expect = 7.5
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +2
Query: 455 PPXXFFXGXFXXGKPPXGKXXXAPGXXFXPXGXTPXPXPXGXPP 586
PP G GKPP G+ G P G T G PP
Sbjct: 693 PPKGRTVGKSGEGKPPKGRTVGKSGEGKPPKGRTVGKSGEGKPP 736
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 28.7 bits (61), Expect = 7.5
Identities = 16/66 (24%), Positives = 20/66 (30%)
Frame = +3
Query: 405 PXGXXFXXPPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPXPGGXP 584
P + PP P P + PP P + PP PP P P
Sbjct: 119 PPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPP-PNPPYPPPLYPPPPNPPPPNAPYPPP 177
Query: 585 LFXXPP 602
+ PP
Sbjct: 178 PYPPPP 183
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 28.3 bits (60), Expect = 9.9
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +3
Query: 498 PPGXKXXXPXGXFXPPGXXPPXPXPGGXPLFXXP 599
PP G PP PP PGG P + P
Sbjct: 587 PPAGVQPPQSGSGAPPAMPPPVGAPGGQPSYSHP 620
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,612,321
Number of Sequences: 59808
Number of extensions: 269036
Number of successful extensions: 571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2860128240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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