Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B18
(970 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 32 0.53
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 3.8
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 5.0
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 6.6
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 6.6
U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protei... 29 6.6
M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein. 29 6.6
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 32.3 bits (70), Expect = 0.53
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Frame = +3
Query: 498 PPGXKXXXPXGXFXPP---GXXPPXPXPGGXPLFXXPPKXFXXF*XPP 632
PPG P PP G PP P PGG P PP F PP
Sbjct: 53 PPGQSIPKPSFFIPPPVPNGFIPPPPGPGGIP---PPPPMFAGGIPPP 97
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/82 (28%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Frame = +3
Query: 402 GPXGXXFXXPPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPX---PXP 572
GP G P P P G PP G + PP P P P
Sbjct: 385 GPPGAFAPPPSAFGAPQGP------GGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPP 438
Query: 573 GGXPLFXXPPKXFXXF*XPPRG 638
GG + PP F PP G
Sbjct: 439 GGPGAYGPPPTGFPPVGAPPPG 460
Score = 29.1 bits (62), Expect = 5.0
Identities = 27/86 (31%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Frame = -1
Query: 637 PRGGF*XXKXIFGGXQXRGXPPGXGXGGXXPGGKXXP--XGXXXFXPGGFSXXKXPXKKX 464
P G F FG Q G P G G PGG P G PGGF P
Sbjct: 386 PPGAFAPPPSAFGAPQGPGGP--GGYGPPPPGGPGAPGSYGPPQGGPGGFG-PPPPGGPG 442
Query: 463 XRG--XXGFXPXGGXXXXXPXGPXXN 392
G GF P G P N
Sbjct: 443 AYGPPPTGFPPVGAPPPGAAGAPGGN 468
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPX-PGGXPLFXXPPK 605
PP G P G PPG P G PP PP P P G P PP
Sbjct: 146 PPSGGPPGP---FDPSGAPPSGGPPGL--FDPSGA--PPSGGPPGPFGPSGAPPSGGPPG 198
Query: 606 XFXXF*XPPRG 638
F PP G
Sbjct: 199 PFNPSEAPPSG 209
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPX-PGGXPLFXXPPK 605
PP G P G PPG P G PP PP P P G P PP
Sbjct: 221 PPSGGPPGPFNPS---GAPPSGGPPGP--FDPSGA--PPSGGPPGPFNPSGAPPSGGPPG 273
Query: 606 XFXXF*XPPRG 638
F PP G
Sbjct: 274 PFDPSGAPPSG 284
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPX-PGGXPLFXXPPK 605
PP G P G PPG P G PP PP P P G P PP
Sbjct: 236 PPSGGPPGP---FDPSGAPPSGGPPGP--FNPSGA--PPSGGPPGPFDPSGAPPSGGPPG 288
Query: 606 XFXXF*XPPRG 638
F PP G
Sbjct: 289 PFDPSGAPPSG 299
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPX-PGGXPLFXXPPK 605
PP G P G PPG P G PP PP P P G P PP
Sbjct: 296 PPSGGPPGP---FDPSGAQPSGGPPGP--FNPSGA--PPSGGPPGPFDPSGAPPSGGPPG 348
Query: 606 XFXXF*XPPRG 638
F PP G
Sbjct: 349 PFNPSGAPPSG 359
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPX-PGGXPLFXXPPK 605
PP G P G PPG P G PP PP P P G P PP
Sbjct: 326 PPSGGPPGP---FDPSGAPPSGGPPGP--FNPSGA--PPSGGPPGPFDPSGAPPSGGPPG 378
Query: 606 XFXXF*XPPRG 638
F PP G
Sbjct: 379 PFDPSGAPPSG 389
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPX-PGGXPLFXXPPK 605
PP G P G PPG P G PP PP P P G P PP
Sbjct: 341 PPSGGPPGPFNPS---GAPPSGGPPGP--FDPSGA--PPSGGPPGPFDPSGAPPSGGPPG 393
Query: 606 XFXXF*XPPRG 638
F PP G
Sbjct: 394 PFDPSGAPPSG 404
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPX-PGGXPLFXXPPK 605
PP G P G PPG P G PP PP P P G P PP
Sbjct: 356 PPSGGPPGP---FDPSGAPPSGGPPGP--FDPSGA--PPSGGPPGPFDPSGAPPSGGPPG 408
Query: 606 XFXXF*XPPRG 638
F PP G
Sbjct: 409 PFNPSGAPPSG 419
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPX-PGGXPLFXXPPK 605
PP G P G PPG P G PP PP P P G P PP
Sbjct: 371 PPSGGPPGP---FDPSGAPPSGGPPGP--FDPSGA--PPSGGPPGPFNPSGAPPSGGPPG 423
Query: 606 XFXXF*XPPRG 638
F PP G
Sbjct: 424 PFNPSGAPPSG 434
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPX-PGGXPLFXXPPK 605
PP G P G PPG P G PP PP P P G P PP
Sbjct: 386 PPSGGPPGP---FDPSGAPPSGGPPGP--FNPSGA--PPSGGPPGPFNPSGAPPSGGPPG 438
Query: 606 XFXXF*XPPRG 638
F PP G
Sbjct: 439 PFNPSGAPPSG 449
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPX-PGGXPLFXXPPK 605
PP G P G PPG P G PP PP P P G P PP
Sbjct: 401 PPSGGPPGPFNPS---GAPPSGGPPGP--FNPSGA--PPSGGPPGPFNPSGAPPSGGPPG 453
Query: 606 XFXXF*XPPRG 638
F PP G
Sbjct: 454 PFNPSGAPPSG 464
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPX-PGGXPLFXXPPK 605
PP G P G PPG P G PP PP P P G P PP
Sbjct: 416 PPSGGPPGPFNPS---GAPPSGGPPGP--FNPSGA--PPSGGPPGPFNPSGAPPSGGPPG 468
Query: 606 XFXXF*XPPRG 638
F PP G
Sbjct: 469 PFNPSGAPPSG 479
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPX-PGGXPLFXXPPK 605
PP G P G PPG P G PP PP P P G P PP
Sbjct: 431 PPSGGPPGPFNPS---GAPPSGGPPGP--FNPSGA--PPSGGPPGPFNPSGAPPSGGPPG 483
Query: 606 XFXXF*XPPRG 638
F PP G
Sbjct: 484 PFDPSGAPPSG 494
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPX-PGGXPLFXXPPK 605
PP G P G PPG P G PP PP P P G P PP
Sbjct: 446 PPSGGPPGPFNPS---GAPPSGGPPGP--FNPSGA--PPSGGPPGPFDPSGAPPSGGPPG 498
Query: 606 XFXXF*XPPRG 638
F PP G
Sbjct: 499 PFNPSGAPPSG 509
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Frame = +3
Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPX-PGGXPLFXXPPK 605
PP G P G PPG P G PP PP P P G P PP
Sbjct: 461 PPSGGPPGPFNPS---GAPPSGGPPGP--FDPSGA--PPSGGPPGPFNPSGAPPSGGPPG 513
Query: 606 XFXXF*XPPRG 638
F PP G
Sbjct: 514 PFDPSGAPPSG 524
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Frame = +3
Query: 492 ENPPGXKXXXPXGXFX-PPGXXPPXPX-PGGXPLFXXPPKXFXXF*XPPRG 638
E PP P PP PP P P G P PP F PP G
Sbjct: 204 EAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG 254
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/69 (30%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Frame = +3
Query: 402 GPXGXXFXXPPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPP--XPXPG 575
GP G P G P P G P G G PPG P P P
Sbjct: 212 GPAGESTYPEPAGPGPAGP-----PGPAGPPGPDGASPTAAPGAAGPPGPPGPAGAPGPD 266
Query: 576 GXPLFXXPP 602
G P PP
Sbjct: 267 GNPGTAGPP 275
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +3
Query: 501 PGXKXXXPXGXFXPP-GXXPPXPXPGGXPLFXXPPKXF 611
PG P G PP G PP P G P PP F
Sbjct: 731 PGYPGYGPPGAMRPPAGFAPPPGAPYGYPPGAPPPAGF 768
Score = 25.4 bits (53), Expect(2) = 6.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 540 PPGXXPPXPXPGGXPLFXXPPK 605
P G PP P PGG P+ PP+
Sbjct: 804 PGGPRPPYPYPGG-PVPPGPPQ 824
Score = 21.4 bits (43), Expect(2) = 6.7
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = +3
Query: 498 PPGXKXXXPXGXFXPPGXXPPXP 566
PPG P G P G P P
Sbjct: 751 PPGAPYGYPPGAPPPAGFHPSHP 773
>U61948-2|AAB03143.2| 345|Caenorhabditis elegans Collagen protein
14 protein.
Length = 345
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/89 (26%), Positives = 28/89 (31%)
Frame = -3
Query: 575 PXGGGRGXXPXGXKXXXGPXXFXPXGVFXXXXXPXKXXPGXPGXXPXXXGXKXXPXGXXX 396
P G G GP P G+ P + PG PG P + P G
Sbjct: 220 PPGAPGNAGEDGKPGDQGPRG--PPGIPGAPGQPGR--PGPPGE-PGTYKTEVGPAGRAG 274
Query: 395 KPXGXXPXXKXGSXXPXXXXXXGGGWGXS 309
P P + G P GGG G S
Sbjct: 275 APGRPGPPGQPGPAGPPGENGKGGGQGPS 303
>M25480-1|AAA27986.1| 326|Caenorhabditis elegans collagen protein.
Length = 326
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/89 (26%), Positives = 28/89 (31%)
Frame = -3
Query: 575 PXGGGRGXXPXGXKXXXGPXXFXPXGVFXXXXXPXKXXPGXPGXXPXXXGXKXXPXGXXX 396
P G G GP P G+ P + PG PG P + P G
Sbjct: 201 PPGAPGNAGEDGKPGDQGPRG--PPGIPGAPGQPGR--PGPPGE-PGTYKTEVGPAGRAG 255
Query: 395 KPXGXXPXXKXGSXXPXXXXXXGGGWGXS 309
P P + G P GGG G S
Sbjct: 256 APGRPGPPGQPGPAGPPGENGKGGGQGPS 284
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,681,198
Number of Sequences: 27780
Number of extensions: 279547
Number of successful extensions: 602
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -