Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B18
         (970 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain...    34   0.16 
At1g31750.1 68414.m03895 proline-rich family protein contains pr...    33   0.22 
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro...    31   1.5  
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa...    30   2.0  
At5g45350.1 68418.m05567 proline-rich family protein contains pr...    28   8.1  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    28   8.1  
At1g61080.1 68414.m06877 proline-rich family protein                   28   8.1  

>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to  NtN2 [Medicago truncatula] GI:3776084; contains Pfam
           profile PF00917: MATH domain
          Length = 420

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 27/70 (38%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = -1

Query: 604 FGGXQXRGXPPGXGXGG--XXPGGKXXPXGXXXFXPGGFSXXKXPXKKXXRGXXGFXPXG 431
           FGG   RG  PG G GG    PGG     G   F PGG         +  RG  GF P G
Sbjct: 17  FGG---RGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGF----GGRGPRG-PGFGPRG 68

Query: 430 GXXXXXPXGP 401
                 P GP
Sbjct: 69  PGPWSGPRGP 78



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/66 (31%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
 Frame = +1

Query: 376 GXXPKGXKXXPXGXXFXPXXXGXXPGXPGXXFXGXFXXXKTPXG-XXXXGPXXXFXPXGX 552
           G  P G    P G  F P   G  PG PG    G       P G     GP       G 
Sbjct: 25  GFGPGGPGFGPGGPGFGPGGPGFGPGGPGFGGRGPRGPGFGPRGPGPWSGPRGPRPGGGG 84

Query: 553 XPRPPP 570
            P P P
Sbjct: 85  GPGPGP 90



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
 Frame = +1

Query: 376 GXXPKGXKXXPXGXXFXPXXXGXXPGXPGXXFXGXFXXXKTPXGXXXXGP-XXXFXPXGX 552
           G   +G      G  F P   G  PG PG    G       P G    GP    F P G 
Sbjct: 11  GRGGRGFGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGP-GFGGRGPRGPGFGPRGP 69

Query: 553 XPRPPPXGEXP 585
            P   P G  P
Sbjct: 70  GPWSGPRGPRP 80



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
 Frame = +1

Query: 391 GXKXXPXGXXFXPXXXGXXPGXPGXXFXGXFXXXKTP--XGXXXXGPXXXFXPXGXXPRP 564
           G    P G  F P   G  PG PG    G     + P   G    GP     P G  PRP
Sbjct: 23  GPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFGGRGPRGPGFGPRGPGPWSGPRG--PRP 80

Query: 565 PPXG 576
              G
Sbjct: 81  GGGG 84


>At1g31750.1 68414.m03895 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 176

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
 Frame = +3

Query: 498 PPGXKXXXPXGXFXPPGXXPP---XPXPGGXPLFXXPP 602
           PPG     P G + PPG  PP    P P G P    PP
Sbjct: 25  PPGAYPPPPQGAYPPPGGYPPQGYPPPPHGYPPAAYPP 62


>At4g15200.1 68417.m02329 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 600

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +3

Query: 498 PPGXKXXXPXGXFXPPGXXPPXPXPGGXPLFXXPPKXFXXF*XPPRG 638
           PPG     P     PP   PP P P   P    PPK       PP+G
Sbjct: 259 PPGRSAPPPPPAAAPPPQPPPPPPPKPQP--PPPPKIARPPPAPPKG 303


>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
           protein B, putative / snRNP-B, putative / Sm protein B,
           putative similar to SP|P27048 Small nuclear
           ribonucleoprotein associated protein B (snRNP-B) (Sm
           protein B) (Sm-B) (SmB) {Mus musculus}
          Length = 254

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 522 PXGXFXPPGXXPPXPXPGGXPLFXXP 599
           P G   PP   P  P PGG P+F  P
Sbjct: 213 PHGMQGPPPSRPGMPPPGGAPMFAPP 238


>At5g45350.1 68418.m05567 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 177

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
 Frame = +3

Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGX--KXXXPXGXFXP-PGXXPPXPXPGGXP 584
           PP G  P                PPG       P G + P PG  PP P  GG P
Sbjct: 17  PPAGYPPPGAYPPAGYPQQGYPPPPGAYPPAGYPPGAYPPAPGGYPPAPGYGGYP 71


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/68 (26%), Positives = 21/68 (30%)
 Frame = +3

Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPXPGGXPLFXXPPKX 608
           PP    P  P             PP      P   + PP   PP P P   P++  PP  
Sbjct: 460 PPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPP---PVYSPPPPP 516

Query: 609 FXXF*XPP 632
                 PP
Sbjct: 517 VYSSPPPP 524


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/60 (28%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
 Frame = +3

Query: 429 PPXGXXPXXPRXXFXXGXXXXENPPGXKXXXPXGXFXPPGXXPPXPXPGGXPL--FXXPP 602
           PP    P  P            +PP            PP   PP P P   PL  F  PP
Sbjct: 417 PPPPPPPPPPLSFIKTASLPLPSPPPTPPIADIAISMPPPPPPPPPPPAVMPLKHFAPPP 476


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,971,287
Number of Sequences: 28952
Number of extensions: 222072
Number of successful extensions: 491
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2343832968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)