Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B17
         (974 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.19 
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    29   0.99 
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    28   1.7  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   3.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.0  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 275 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 168
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 392 LNSLKLEIHNYLQSCFKLNASLEFNDKVY 306
           L  L LEI N+ Q+   L  +LE+ +KVY
Sbjct: 205 LGELSLEIENFSQASQDLKTALEWKEKVY 233


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 212 LKSFH-LGSGAALTAPRASTNAKTKLKIRTKFILPKFYSAGEFKIPIQYRSTRTLRMIKS 36
           L+S H L S  + T PR   N    +    K + P  ++   F+I + Y  TR L  I++
Sbjct: 291 LQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRILPAIQN 350


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = -1

Query: 377 LEIHNYLQSCFKLNASLEFNDKVYFPNDFACPMTAIAGPALINPSRTLRPTFSI 216
           L +H YL +C +  + +E    ++    +   +T+I  P +++PS+ +    S+
Sbjct: 130 LLLHLYLLNCHEQGSLIEEPRPLFLDPSWKEKVTSIMSPQMVDPSKMISSCLSL 183


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 17/73 (23%), Positives = 19/73 (26%)
 Frame = +3

Query: 651  PPPPXXXXXXXXKXXPXAGPPPXGGGXXXPXXXKXXXRXXRXPXPPQXPXXXXPXXGKXX 830
            PP P             A PP        P   K        P P + P    P  G   
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209

Query: 831  XPXXSXSPXPXXP 869
             P  S +P    P
Sbjct: 1210 VPPPSTAPPVPTP 1222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,179
Number of Sequences: 5004
Number of extensions: 43145
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)