Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B17
         (974 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L21990-1|AAA60301.1|  464|Homo sapiens spiceosomal protein protein.    33   1.6  
BC015804-1|AAH15804.1|  481|Homo sapiens SF3A2 protein protein.        33   1.6  
BC009903-1|AAH09903.1|  464|Homo sapiens splicing factor 3a, sub...    33   1.6  
BC004434-1|AAH04434.1|  464|Homo sapiens splicing factor 3a, sub...    33   1.6  
AC005263-1|AAC25613.1|  464|Homo sapiens SP62_HUMAN protein.           33   1.6  
BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.          31   4.8  
AF160252-1|AAF03681.1| 1089|Homo sapiens KIAA0553 protein protein.     31   8.4  
AB011125-1|BAA25479.2| 1450|Homo sapiens KIAA0553 protein protein.     31   8.4  

>L21990-1|AAA60301.1|  464|Homo sapiens spiceosomal protein protein.
          Length = 464

 Score = 33.1 bits (72), Expect = 1.6
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = +3

Query: 651 PPPPXXXXXXXXKXXPXAGPPPXGGGXXXPXXXKXXXRXXRXPXPPQXP 797
           PPPP           P + PPP  GG   P            P PPQ P
Sbjct: 233 PPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLP 281


>BC015804-1|AAH15804.1|  481|Homo sapiens SF3A2 protein protein.
          Length = 481

 Score = 33.1 bits (72), Expect = 1.6
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = +3

Query: 651 PPPPXXXXXXXXKXXPXAGPPPXGGGXXXPXXXKXXXRXXRXPXPPQXP 797
           PPPP           P + PPP  GG   P            P PPQ P
Sbjct: 233 PPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLP 281


>BC009903-1|AAH09903.1|  464|Homo sapiens splicing factor 3a,
           subunit 2, 66kDa protein.
          Length = 464

 Score = 33.1 bits (72), Expect = 1.6
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = +3

Query: 651 PPPPXXXXXXXXKXXPXAGPPPXGGGXXXPXXXKXXXRXXRXPXPPQXP 797
           PPPP           P + PPP  GG   P            P PPQ P
Sbjct: 233 PPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLP 281


>BC004434-1|AAH04434.1|  464|Homo sapiens splicing factor 3a,
           subunit 2, 66kDa protein.
          Length = 464

 Score = 33.1 bits (72), Expect = 1.6
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = +3

Query: 651 PPPPXXXXXXXXKXXPXAGPPPXGGGXXXPXXXKXXXRXXRXPXPPQXP 797
           PPPP           P + PPP  GG   P            P PPQ P
Sbjct: 233 PPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLP 281


>AC005263-1|AAC25613.1|  464|Homo sapiens SP62_HUMAN protein.
          Length = 464

 Score = 33.1 bits (72), Expect = 1.6
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = +3

Query: 651 PPPPXXXXXXXXKXXPXAGPPPXGGGXXXPXXXKXXXRXXRXPXPPQXP 797
           PPPP           P + PPP  GG   P            P PPQ P
Sbjct: 233 PPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGPPQLP 281


>BC038446-1|AAH38446.1|  673|Homo sapiens SF1 protein protein.
          Length = 673

 Score = 31.5 bits (68), Expect = 4.8
 Identities = 17/70 (24%), Positives = 20/70 (28%)
 Frame = +3

Query: 651 PPPPXXXXXXXXKXXPXAGPPPXGGGXXXPXXXKXXXRXXRXPXPPQXPXXXXPXXGKXX 830
           PPPP        +  P   PPP  G    P          +   PPQ P    P   +  
Sbjct: 69  PPPPPPPPPPPPQQPPPPPPPPSPGASYPPPQPPPPPPLYQRVSPPQPPPPQPPRKDQQP 128

Query: 831 XPXXSXSPXP 860
            P       P
Sbjct: 129 GPAGGGGDFP 138


>AF160252-1|AAF03681.1| 1089|Homo sapiens KIAA0553 protein protein.
          Length = 1089

 Score = 30.7 bits (66), Expect = 8.4
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 159 AGSRRGQRCSRAQVEALQEN*ESGTQRSRWINQSGSSYSRHRASK 293
           A S R  + S +Q    +E  +SG++ SR  ++SG  +S HR+S+
Sbjct: 410 ASSHRLHQKSPSQYSEEEEEEDSGSEHSRSRSRSGRRHSSHRSSR 454


>AB011125-1|BAA25479.2| 1450|Homo sapiens KIAA0553 protein protein.
          Length = 1450

 Score = 30.7 bits (66), Expect = 8.4
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 159 AGSRRGQRCSRAQVEALQEN*ESGTQRSRWINQSGSSYSRHRASK 293
           A S R  + S +Q    +E  +SG++ SR  ++SG  +S HR+S+
Sbjct: 771 ASSHRLHQKSPSQYSEEEEEEDSGSEHSRSRSRSGRRHSSHRSSR 815


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,250,714
Number of Sequences: 237096
Number of extensions: 1891082
Number of successful extensions: 4374
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4195
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12991778748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)