Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_B17
(974 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily ass... 32 0.71
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.8
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ... 28 8.8
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ... 28 8.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 8.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 8.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 8.8
>U40951-4|AAG01568.1| 756|Caenorhabditis elegans Temporarily
assigned gene nameprotein 130 protein.
Length = 756
Score = 31.9 bits (69), Expect = 0.71
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 417 FLYVLDYIMQFLDYIXNYYKNTTVIAFIRVIKYTCAEIYF 536
F+Y++ YI+ + Y K + F VI +TCA I F
Sbjct: 651 FIYIIYYILMKMIYREKIPKRAIALLFAAVISWTCAGILF 690
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 651 PPPPXXXXXXXXKXXPXAGPPPXGGGXXXPXXXKXXXRXXRXPXPPQXPXXXXP 812
PPPP P PPP GG P P PP P P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPP-GGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 651 PPPPXXXXXXXXKXXPXAGPPPXGGGXXXPXXXKXXXRXXRXPXPPQXPXXXXP 812
PPPP P PPP GG P P PP P P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPP-GGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
protein Y38E10A.6b protein.
Length = 1345
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 81 NFEFSGT-IEFR*NEFCTYFELRLRVGAGSRRGQRCSRAQVEALQEN*ESGTQRSRWINQ 257
+F++ G I N YF +R R+ G++RG+R S + + E + G +++ N+
Sbjct: 624 HFQYIGDKIGLTANFVSNYFTIRKRMSKGAKRGERLSDSDDDD-DEPEDDGEEKNEEKNE 682
Query: 258 SGSSYSRHRASKIIRKVDFI 317
+ + +A K + + +
Sbjct: 683 EEARKAAEKAEKAQKMTEML 702
>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
protein Y38E10A.6a protein.
Length = 1343
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 81 NFEFSGT-IEFR*NEFCTYFELRLRVGAGSRRGQRCSRAQVEALQEN*ESGTQRSRWINQ 257
+F++ G I N YF +R R+ G++RG+R S + + E + G +++ N+
Sbjct: 622 HFQYIGDKIGLTANFVSNYFTIRKRMSKGAKRGERLSDSDDDD-DEPEDDGEEKNEEKNE 680
Query: 258 SGSSYSRHRASKIIRKVDFI 317
+ + +A K + + +
Sbjct: 681 EEARKAAEKAEKAQKMTEML 700
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 651 PPPPXXXXXXXXKXXPXAGPPPXGGGXXXPXXXKXXXRXXRXPXPPQXPXXXXP 812
PPPP P PPP GG P P PP P P
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPP-GGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/71 (26%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
Frame = +3
Query: 696 PXAGPPPXGGGXXXPXXXKXXXRXXR--XPXPPQXPXXXXPXXGKXXXPXXSXSPXPXXP 869
P PP G G P R P PP P G P + SP P P
Sbjct: 243 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 302
Query: 870 XXXXXXTXXXP 902
T P
Sbjct: 303 PRGSPPTGSLP 313
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/71 (26%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
Frame = +3
Query: 696 PXAGPPPXGGGXXXPXXXKXXXRXXR--XPXPPQXPXXXXPXXGKXXXPXXSXSPXPXXP 869
P PP G G P R P PP P G P + SP P P
Sbjct: 264 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 323
Query: 870 XXXXXXTXXXP 902
T P
Sbjct: 324 PRGSPPTGSLP 334
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/71 (26%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
Frame = +3
Query: 696 PXAGPPPXGGGXXXPXXXKXXXRXXR--XPXPPQXPXXXXPXXGKXXXPXXSXSPXPXXP 869
P PP G G P R P PP P G P + SP P P
Sbjct: 249 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 308
Query: 870 XXXXXXTXXXP 902
T P
Sbjct: 309 PRGSPPTGSLP 319
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,804,515
Number of Sequences: 27780
Number of extensions: 285559
Number of successful extensions: 623
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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