Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B17
         (974 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex...    28   8.2  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    25   8.4  

>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 826

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 20/73 (27%), Positives = 21/73 (28%), Gaps = 3/73 (4%)
 Frame = +3

Query: 651 PPPPXXXXXXXXKXXPXAGPPPXGGGXXXPXXXKXXXRXXRXPXPP---QXPXXXXPXXG 821
           PPPP        K  P   PPP       P   +        P PP     P    P   
Sbjct: 486 PPPPSSKMSPSVKAYPPPPPPPEYEPSPPPPSSEMSPSVRAYPPPPPLSPPPPSPPPPYI 545

Query: 822 KXXXPXXSXSPXP 860
               P  S SP P
Sbjct: 546 YSSPPPPSPSPPP 558


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 25.4 bits (53), Expect(2) = 8.4
 Identities = 19/93 (20%), Positives = 21/93 (22%)
 Frame = +3

Query: 696 PXAGPPPXGGGXXXPXXXKXXXRXXRXPXPPQXPXXXXPXXGKXXXPXXSXSPXPXXPXX 875
           P    PP       P   +        P PP+ P    P       P  S  P P  P  
Sbjct: 567 PINKTPPPPPPPPPPLPSRSIPPPLAQPPPPRPPPPPPPPPSSRSIPSPSAPPPPPPPPP 626

Query: 876 XXXXTXXXPXXXXXXPXXXXXXXGXPXXXXPPP 974
               T          P         P     PP
Sbjct: 627 SFGSTGNKRQAQPPPPPPPPPPTRIPAAKCAPP 659



 Score = 21.0 bits (42), Expect(2) = 8.4
 Identities = 8/22 (36%), Positives = 8/22 (36%)
 Frame = +3

Query: 651 PPPPXXXXXXXXKXXPXAGPPP 716
           PPPP           P   PPP
Sbjct: 507 PPPPPPLFMSTTSFSPSQPPPP 528


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,633,365
Number of Sequences: 28952
Number of extensions: 284160
Number of successful extensions: 597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2363283864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)