Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_B16
         (975 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
 Frame = +2

Query: 803 QXPPXTXGLPLXXPAP-LXPXXP----PPXPPRPXPPXPXPXXPXSXXXXQXXAXP 955
           Q    + G P   P+P   P  P    PP P +  PP   P  P S    Q    P
Sbjct: 12  QSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 11/38 (28%), Positives = 12/38 (31%)
 Frame = +2

Query: 797 PXQXPPXTXGLPLXXPAPLXPXXPPPXPPRPXPPXPXP 910
           P   P  +   P     P     PPP  P   PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 878 PPRPXPPXPXP 910
           PP+P PP P P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 865 PXPXPPPPXP 894
           P P PPPP P
Sbjct: 339 PKPAPPPPPP 348


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 100 MTRKRRNGGRAKHGRGHVKAVRCTNC 177
           +T+KR  G       G  + V CTNC
Sbjct: 405 VTQKREGGPPTGATTGPNEIVTCTNC 430


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 100 MTRKRRNGGRAKHGRGHVKAVRCTNC 177
           +T+KR  G       G  + V CTNC
Sbjct: 425 VTQKREGGPPTGATTGPNEIVTCTNC 450


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 100 MTRKRRNGGRAKHGRGHVKAVRCTNC 177
           +T+KR  G       G  + V CTNC
Sbjct: 374 VTQKREGGPPTGATTGPNEIVTCTNC 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,128
Number of Sequences: 438
Number of extensions: 6483
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)